| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pantoea sp. MT58 | 1.0 | IAI47_06580 | | DEAD/DEAH box helicase | 1.0 | IAI47_10850 | | L,D-transpeptidase family protein | 0.19 | 18 |
| Escherichia coli ECOR27 | 0.84 | NOLOHH_14930 | radD | Putative DNA repair helicase RadD | 0.50 | NOLOHH_21000 | ldtC | L,D-transpeptidase LdtC | — | — |
| Escherichia coli ECRC62 | 0.84 | BNILDI_13850 | radD | Putative DNA repair helicase RadD | 0.50 | BNILDI_19165 | ldtC | L,D-transpeptidase LdtC | — | — |
| Escherichia coli ECRC98 | 0.84 | JDDGAC_27315 | radD | Putative DNA repair helicase RadD | 0.50 | JDDGAC_07135 | ldtC | L,D-transpeptidase LdtC | — | — |
| Escherichia coli ECRC102 | 0.84 | NIAGMN_21120 | radD | Putative DNA repair helicase RadD | 0.50 | NIAGMN_24355 | ldtC | L,D-transpeptidase LdtC | — | — |
| Escherichia coli ECRC101 | 0.84 | MCAODC_14405 | radD | Putative DNA repair helicase RadD | 0.50 | MCAODC_22835 | ldtC | L,D-transpeptidase LdtC | — | — |
| Escherichia coli ECRC99 | 0.84 | KEDOAH_04830 | radD | Putative DNA repair helicase RadD | 0.50 | KEDOAH_24280 | ldtC | L,D-transpeptidase LdtC | — | — |
| Escherichia coli ECRC101 | 0.84 | OKFHMN_23355 | radD | Putative DNA repair helicase RadD | 0.50 | OKFHMN_03475 | ldtC | L,D-transpeptidase LdtC | — | — |
| Escherichia coli ECOR38 | 0.84 | HEPCGN_22620 | radD | Putative DNA repair helicase RadD | 0.50 | HEPCGN_24010 | ldtC | L,D-transpeptidase LdtC | low | > 85 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.84 | OHPLBJKB_01525 | | Putative DNA repair helicase RadD | 0.50 | OHPLBJKB_02553 | | putative L,D-transpeptidase YcfS | low | > 73 |
| Escherichia coli Nissle 1917 | 0.84 | ECOLIN_RS12765 | | DEAD/DEAH box helicase | 0.50 | ECOLIN_RS06420 | | L,D-transpeptidase LdtC | low | > 52 |
| Escherichia fergusonii Becca | 0.84 | EFB2_01672 | | Putative DNA repair helicase RadD | 0.50 | EFB2_02862 | | putative L,D-transpeptidase YcfS | low | > 86 |
| Escherichia coli BW25113 | 0.84 | b2184 | yejH | DNA damage response helicase (yejH or radD) (from data) | 0.50 | b1113 | ycfS | hypothetical protein (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.84 | ECD_02114 | | putative ATP-dependent DNA or RNA helicase | 0.50 | ECD_01109 | | L,D-transpeptidase linking Lpp to murein | low | > 60 |
| Serratia liquefaciens MT49 | 0.84 | IAI46_17350 | | DEAD/DEAH box helicase family protein | 0.65 | IAI46_11175 | | L,D-transpeptidase family protein | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.83 | GFF3752 | | ATP-dependent RNA helicase YejH | 0.52 | GFF3396 | | L,D-transpeptidase YcfS | low | > 78 |
| Klebsiella michiganensis M5al | 0.83 | BWI76_RS19815 | | ATP-dependent helicase | 0.52 | BWI76_RS11200 | | transpeptidase | low | > 92 |
| Rahnella sp. WP5 | 0.83 | EX31_RS19200 | | DEAD/DEAH box helicase | 0.67 | EX31_RS13880 | | L,D-transpeptidase family protein | low | > 89 |
| Enterobacter sp. TBS_079 | 0.82 | MPMX20_03150 | | Putative DNA repair helicase RadD | 0.50 | MPMX20_01794 | | putative L,D-transpeptidase YcfS | low | > 85 |
| Enterobacter asburiae PDN3 | 0.82 | EX28DRAFT_0377 | | DNA or RNA helicases of superfamily II | 0.51 | EX28DRAFT_1817 | | Uncharacterized protein conserved in bacteria | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.80 | HER17_RS12960 | | DEAD/DEAH box helicase family protein | 0.61 | HER17_RS08950 | | L,D-transpeptidase family protein | low | > 75 |
| Dickeya dadantii 3937 | 0.78 | DDA3937_RS09150 | | DEAD/DEAH box helicase | 0.65 | DDA3937_RS12750 | | L,D-transpeptidase family protein | low | > 74 |
| Dickeya dianthicola 67-19 | 0.76 | HGI48_RS09190 | | DEAD/DEAH box helicase | 0.65 | HGI48_RS12815 | | L,D-transpeptidase family protein | low | > 71 |
| Dickeya dianthicola ME23 | 0.76 | DZA65_RS09490 | | DEAD/DEAH box helicase | 0.65 | DZA65_RS13280 | | L,D-transpeptidase family protein | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.59 | CSW01_08225 | | ATP-dependent helicase | 0.39 | CSW01_14325 | | peptidase | low | > 62 |
| Shewanella loihica PV-4 | 0.51 | Shew_1532 | | type III restriction enzyme, res subunit (RefSeq) | 0.43 | Shew_1006 | | ErfK/YbiS/YcfS/YnhG family protein (RefSeq) | low | > 60 |
Not shown: 5 genomes with orthologs for IAI47_06580 only; 11 genomes with orthologs for IAI47_10850 only