| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Serratia liquefaciens MT49 | 1.0 | IAI46_23250 | | topoisomerase DNA-binding C4 zinc finger domain-containing protein | 1.0 | IAI46_11175 | | L,D-transpeptidase family protein | 0.48 | 6 |
| Rahnella sp. WP5 | 0.79 | EX31_RS15960 | | hypothetical protein | 0.70 | EX31_RS13880 | | L,D-transpeptidase family protein | low | > 89 |
| Klebsiella michiganensis M5al | 0.78 | BWI76_RS25655 | | DNA topoisomerase type IA zn finger domain-containing protein | 0.51 | BWI76_RS11200 | | transpeptidase | low | > 92 |
| Pectobacterium carotovorum WPP14 | 0.77 | HER17_RS02240 | | topoisomerase DNA-binding C4 zinc finger domain-containing protein | 0.69 | HER17_RS08950 | | L,D-transpeptidase family protein | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.77 | GFF2395 | | Similar to C-terminal Zn-finger domain of DNA topoisomerase I | 0.51 | GFF3396 | | L,D-transpeptidase YcfS | low | > 78 |
| Dickeya dianthicola ME23 | 0.76 | DZA65_RS20325 | | hypothetical protein | 0.70 | DZA65_RS13280 | | L,D-transpeptidase family protein | low | > 75 |
| Escherichia coli ECRC62 | 0.76 | BNILDI_02175 | yrdD | Uncharacterized protein YrdD | 0.52 | BNILDI_19165 | ldtC | L,D-transpeptidase LdtC | — | — |
| Escherichia coli ECOR38 | 0.76 | HEPCGN_16375 | yrdD | Uncharacterized protein YrdD | 0.52 | HEPCGN_24010 | ldtC | L,D-transpeptidase LdtC | low | > 85 |
| Dickeya dadantii 3937 | 0.76 | DDA3937_RS22495 | | topoisomerase DNA-binding C4 zinc finger domain-containing protein | 0.70 | DDA3937_RS12750 | | L,D-transpeptidase family protein | low | > 74 |
| Dickeya dianthicola 67-19 | 0.76 | HGI48_RS19200 | | topoisomerase DNA-binding C4 zinc finger domain-containing protein | 0.70 | HGI48_RS12815 | | L,D-transpeptidase family protein | low | > 71 |
| Escherichia fergusonii Becca | 0.76 | EFB2_00540 | | DNA topoisomerase 1 | 0.52 | EFB2_02862 | | putative L,D-transpeptidase YcfS | low | > 86 |
| Escherichia coli Nissle 1917 | 0.76 | ECOLIN_RS18850 | | type I DNA topoisomerase | 0.52 | ECOLIN_RS06420 | | L,D-transpeptidase LdtC | low | > 52 |
| Escherichia coli ECOR27 | 0.76 | NOLOHH_09345 | yrdD | Uncharacterized protein YrdD | 0.52 | NOLOHH_21000 | ldtC | L,D-transpeptidase LdtC | — | — |
| Enterobacter asburiae PDN3 | 0.76 | EX28DRAFT_0044 | | Zn-finger domain associated with topoisomerase type I | 0.52 | EX28DRAFT_1681 | | Uncharacterized protein conserved in bacteria | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.75 | OHPLBJKB_00420 | | DNA topoisomerase 1 | 0.52 | OHPLBJKB_02553 | | putative L,D-transpeptidase YcfS | low | > 73 |
| Escherichia coli ECRC101 | 0.75 | MCAODC_08075 | yrdD | Uncharacterized protein YrdD | 0.52 | MCAODC_22835 | ldtC | L,D-transpeptidase LdtC | — | — |
| Escherichia coli ECRC98 | 0.75 | JDDGAC_21175 | yrdD | Uncharacterized protein YrdD | 0.52 | JDDGAC_07135 | ldtC | L,D-transpeptidase LdtC | — | — |
| Escherichia coli ECRC102 | 0.75 | NIAGMN_15315 | yrdD | Uncharacterized protein YrdD | 0.52 | NIAGMN_24355 | ldtC | L,D-transpeptidase LdtC | — | — |
| Escherichia coli ECRC99 | 0.75 | KEDOAH_10595 | yrdD | Uncharacterized protein YrdD | 0.52 | KEDOAH_24280 | ldtC | L,D-transpeptidase LdtC | — | — |
| Escherichia coli BW25113 | 0.75 | b3283 | yrdD | predicted DNA topoisomerase (NCBI) | 0.51 | b1113 | ycfS | hypothetical protein (NCBI) | low | > 76 |
| Enterobacter sp. TBS_079 | 0.75 | MPMX20_04191 | | DNA topoisomerase 1 | 0.52 | MPMX20_01949 | | putative L,D-transpeptidase YnhG | low | > 85 |
| Escherichia coli BL21 | 0.75 | ECD_03134 | | ssDNA-binding protein, function unknown | 0.51 | ECD_01109 | | L,D-transpeptidase linking Lpp to murein | low | > 60 |
| Escherichia coli ECRC101 | 0.75 | OKFHMN_17555 | yrdD | Uncharacterized protein YrdD | 0.52 | OKFHMN_03475 | ldtC | L,D-transpeptidase LdtC | — | — |
| Pantoea sp. MT58 | 0.71 | IAI47_02305 | | topoisomerase DNA-binding C4 zinc finger domain-containing protein | 0.64 | IAI47_10850 | | L,D-transpeptidase family protein | low | > 76 |
| Vibrio cholerae E7946 ATCC 55056 | 0.52 | CSW01_00255 | | DNA topoisomerase | 0.40 | CSW01_14325 | | peptidase | low | > 62 |
| Shewanella loihica PV-4 | 0.40 | Shew_3731 | | DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) | 0.43 | Shew_1006 | | ErfK/YbiS/YcfS/YnhG family protein (RefSeq) | low | > 60 |
Not shown: 5 genomes with orthologs for IAI46_23250 only; 11 genomes with orthologs for IAI46_11175 only