Conservation of cofitness between HSERO_RS16870 and HSERO_RS00395 in Herbaspirillum seropedicae SmR1

23 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS16870 D-alanyl-D-alanine carboxypeptidase 1.0 HSERO_RS00395 hypothetical protein 0.30 4
Variovorax sp. SCN45 0.37 GFF5516 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.72 GFF2088 Putative lipase in cluster with Phosphatidate cytidylyltransferase low > 127
Variovorax sp. OAS795 0.36 ABID97_RS01685 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 0.73 ABID97_RS24885 bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase low > 91
Cupriavidus basilensis FW507-4G11 0.36 RR42_RS03245 D-alanyl-D-alanine carboxypeptidase 0.65 RR42_RS31030 hypothetical protein low > 128
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS22535 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 0.69 PFLU_RS30060 bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase low > 109
Pseudomonas sp. S08-1 0.35 OH686_03105 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 0.69 OH686_12590 Putative lipase in cluster with Phosphatidate cytidylyltransferase low > 80
Pseudomonas fluorescens SBW25 0.35 PFLU_RS22535 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 0.69 PFLU_RS30060 bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase low > 109
Pseudomonas simiae WCS417 0.35 PS417_20920 D-alanyl-D-alanine carboxypeptidase 0.68 PS417_28395 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_02595 D-alanyl-D-alanine carboxypeptidase 0.70 AO356_15100 hypothetical protein low > 104
Pseudomonas sp. RS175 0.34 PFR28_01057 D-alanyl-D-alanine carboxypeptidase DacC 0.70 PFR28_03922 putative protein YnbC low > 88
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_2344 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.70 Pf6N2E2_4953 Putative lipase in cluster with Phosphatidate cytidylyltransferase low > 103
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_3846 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.71 Pf1N1B4_1952 Putative lipase in cluster with Phosphatidate cytidylyltransferase low > 87
Escherichia coli BL21 0.13 ECD_03047 D-alanyl-D-alanine carboxypeptidase 0.59 ECD_01365 putative esterase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.13 OHPLBJKB_00518 D-alanyl-D-alanine carboxypeptidase DacB 0.59 OHPLBJKB_02304 putative protein YnbC low > 73
Escherichia coli ECOR27 0.13 NOLOHH_09840 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.59 NOLOHH_19405 ynbC Uncharacterized protein YnbC low > 75
Escherichia coli BW25113 0.13 b3182 dacB D-alanyl-D-alanine carboxypeptidase (NCBI) 0.59 b1410 ynbC predicted hydrolase (NCBI) low > 76
Escherichia fergusonii Becca 0.13 EFB2_00641 D-alanyl-D-alanine carboxypeptidase DacB 0.59 EFB2_02568 putative protein YnbC low > 86
Escherichia coli ECOR38 0.13 HEPCGN_16915 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.58 HEPCGN_26095 ynbC Uncharacterized protein YnbC low > 87
Escherichia coli Nissle 1917 0.13 ECOLIN_RS18325 serine-type D-Ala-D-Ala carboxypeptidase 0.59 ECOLIN_RS08165 bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase — —
Escherichia coli ECRC62 0.13 BNILDI_01695 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.59 BNILDI_17860 ynbC Uncharacterized protein YnbC low > 75
Escherichia coli ECRC101 0.13 MCAODC_08560 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.59 MCAODC_16190 ynbC Uncharacterized protein YnbC low > 87
Escherichia coli ECRC100 0.13 OKFHMN_18040 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.59 OKFHMN_01745 ynbC Uncharacterized protein YnbC low > 80
Escherichia coli ECRC98 0.13 JDDGAC_21665 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.59 JDDGAC_04235 ynbC Uncharacterized protein YnbC low > 86
Escherichia coli ECRC102 0.13 NIAGMN_15800 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.59 NIAGMN_25880 ynbC Uncharacterized protein YnbC — —

Not shown: 46 genomes with orthologs for HSERO_RS16870 only; 2 genomes with orthologs for HSERO_RS00395 only