Conservation of cofitness between HER17_RS12895 and HER17_RS19695 in Pectobacterium carotovorum WPP14

27 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS12895 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 1.0 HER17_RS19695 DedA family protein 0.75 15
Serratia liquefaciens MT49 0.80 IAI46_17305 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.74 IAI46_21730 DedA family protein low > 86
Erwinia tracheiphila SCR3 0.75 LU632_RS17465 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.74 LU632_RS20550 DedA family protein low > 74
Rahnella sp. WP5 0.74 EX31_RS19120 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.79 EX31_RS08030 DedA family protein low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF3761 Lipoprotein spr precursor 0.69 GFF3121 DedA family inner membrane protein YghB low > 78
Dickeya dadantii 3937 0.72 DDA3937_RS09195 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.89 DDA3937_RS01810 DedA family protein low > 74
Enterobacter sp. TBS_079 0.72 MPMX20_03141 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.70 MPMX20_03853 Inner membrane protein YghB low > 85
Dickeya dianthicola ME23 0.72 DZA65_RS09540 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.89 DZA65_RS01780 DedA family protein low > 75
Dickeya dianthicola 67-19 0.72 HGI48_RS09235 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.89 HGI48_RS01705 DedA family protein low > 71
Enterobacter asburiae PDN3 0.71 EX28DRAFT_0386 Cell wall-associated hydrolases (invasion-associated proteins) 0.69 EX28DRAFT_3047 Uncharacterized membrane-associated protein low > 76
Escherichia coli BW25113 0.71 b2175 spr predicted peptidase, outer membrane lipoprotein (NCBI) 0.70 b3009 yghB conserved inner membrane protein (NCBI) low > 76
Escherichia coli ECOR27 0.71 NOLOHH_14975 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.70 NOLOHH_10730 yghB Inner membrane protein YghB 0.75 17
Escherichia coli ECRC99 0.71 KEDOAH_04785 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.70 KEDOAH_09190 yghB Inner membrane protein YghB — —
Escherichia coli ECRC98 0.71 JDDGAC_27360 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.70 JDDGAC_22590 yghB Inner membrane protein YghB low > 86
Escherichia coli ECRC100 0.71 OKFHMN_23400 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.70 OKFHMN_18955 yghB Inner membrane protein YghB low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_01534 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.70 OHPLBJKB_00692 Inner membrane protein YghB low > 73
Escherichia coli BL21 0.71 ECD_02105 murein DD-endopeptidase, space-maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD-carboxypeptidase 0.70 ECD_02882 general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter 0.75 20
Escherichia coli ECOR38 0.71 HEPCGN_22665 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.70 HEPCGN_17820 yghB Inner membrane protein YghB low > 87
Escherichia coli ECRC101 0.71 MCAODC_14450 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.70 MCAODC_09470 yghB Inner membrane protein YghB low > 87
Escherichia coli ECRC102 0.71 NIAGMN_21165 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.70 NIAGMN_16720 yghB Inner membrane protein YghB — —
Escherichia fergusonii Becca 0.71 EFB2_01681 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.70 EFB2_00801 Inner membrane protein YghB low > 86
Escherichia coli Nissle 1917 0.71 ECOLIN_RS12720 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.70 ECOLIN_RS17320 DedA family general envelope maintenance protein YghB low > 55
Escherichia coli ECRC62 0.71 BNILDI_13895 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.70 BNILDI_00785 yghB Inner membrane protein YghB low > 75
Klebsiella michiganensis M5al 0.71 BWI76_RS19770 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.66 BWI76_RS24290 membrane protein low > 92
Pantoea sp. MT58 0.67 IAI47_06625 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.77 IAI47_03210 DedA family protein low > 76
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_02660 peptidase P60 0.22 AO353_06585 hypothetical protein low > 101
Pseudomonas sp. RS175 0.26 PFR28_03213 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.21 PFR28_03891 Protein DedA low > 88
Pseudomonas fluorescens FW300-N2C3 0.26 AO356_19115 peptidase P60 0.21 AO356_15200 hypothetical protein low > 104

Not shown: 7 genomes with orthologs for HER17_RS12895 only; 5 genomes with orthologs for HER17_RS19695 only