| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pectobacterium carotovorum WPP14 | 1.0 | HER17_RS20085 | | nucleoside diphosphate kinase regulator | 1.0 | HER17_RS17580 | | L,D-transpeptidase family protein | 0.66 | 11 |
| Serratia liquefaciens MT49 | 0.84 | IAI46_22555 | | nucleoside diphosphate kinase regulator | 0.68 | IAI46_02600 | | L,D-transpeptidase family protein | low | > 86 |
| Dickeya dadantii 3937 | 0.83 | DDA3937_RS01505 | | nucleoside diphosphate kinase regulator | 0.74 | DDA3937_RS03570 | | L,D-transpeptidase family protein | low | > 74 |
| Dickeya dianthicola 67-19 | 0.82 | HGI48_RS01420 | | nucleoside diphosphate kinase regulator | 0.73 | HGI48_RS03670 | | L,D-transpeptidase family protein | low | > 71 |
| Dickeya dianthicola ME23 | 0.82 | DZA65_RS01485 | | nucleoside diphosphate kinase regulator | 0.73 | DZA65_RS03790 | | L,D-transpeptidase family protein | low | > 75 |
| Rahnella sp. WP5 | 0.73 | EX31_RS12330 | | nucleoside diphosphate kinase regulator | 0.66 | EX31_RS10780 | | L,D-transpeptidase family protein | low | > 89 |
| Klebsiella michiganensis M5al | 0.68 | BWI76_RS07955 | | nucleoside diphosphate kinase regulator | 0.61 | BWI76_RS09030 | | transpeptidase | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.61 | GFF4522 | | Regulator of nucleoside diphosphate kinase | 0.61 | GFF716 | | L,D-transpeptidase YbiS | low | > 78 |
| Escherichia coli BL21 | 0.60 | ECD_00578 | | regulator of nucleoside diphosphate kinase | 0.61 | ECD_00786 | | L,D-transpeptidase linking Lpp to murein | — | — |
| Escherichia fergusonii Becca | 0.60 | EFB2_03482 | | Regulator of nucleoside diphosphate kinase | 0.61 | EFB2_03286 | | putative L,D-transpeptidase YbiS | low | > 86 |
| Escherichia coli Nissle 1917 | 0.60 | ECOLIN_RS03335 | | nucleoside diphosphate kinase regulator | 0.61 | ECOLIN_RS04365 | | L,D-transpeptidase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.60 | OHPLBJKB_03095 | | Regulator of nucleoside diphosphate kinase | 0.61 | OHPLBJKB_02894 | | putative L,D-transpeptidase YbiS | low | > 73 |
| Escherichia coli ECRC101 | 0.60 | MCAODC_26700 | rnk | nucleoside diphosphate kinase regulator | 0.61 | MCAODC_25380 | ldtB | L,D-transpeptidase | low | > 87 |
| Escherichia coli ECRC99 | 0.60 | KEDOAH_20485 | rnk | nucleoside diphosphate kinase regulator | 0.61 | KEDOAH_21745 | ldtB | L,D-transpeptidase | — | — |
| Escherichia coli ECRC98 | 0.60 | JDDGAC_11130 | rnk | nucleoside diphosphate kinase regulator | 0.61 | JDDGAC_09800 | ldtB | L,D-transpeptidase | low | > 86 |
| Escherichia coli ECRC102 | 0.60 | NIAGMN_05540 | rnk | nucleoside diphosphate kinase regulator | 0.61 | NIAGMN_04210 | ldtB | L,D-transpeptidase | — | — |
| Escherichia coli BW25113 | 0.60 | b0610 | rnk | nucleoside diphosphate kinase regulator (NCBI) | 0.61 | b0819 | ybiS | hypothetical protein (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.60 | BNILDI_21870 | rnk | nucleoside diphosphate kinase regulator | 0.61 | BNILDI_20795 | ldtB | L,D-transpeptidase | low | > 75 |
| Escherichia coli ECOR27 | 0.60 | NOLOHH_23860 | rnk | nucleoside diphosphate kinase regulator | 0.61 | NOLOHH_22515 | ldtB | L,D-transpeptidase | low | > 75 |
| Escherichia coli ECRC100 | 0.60 | OKFHMN_07485 | rnk | nucleoside diphosphate kinase regulator | 0.61 | OKFHMN_06165 | ldtB | L,D-transpeptidase | — | — |
| Escherichia coli ECOR38 | 0.60 | HEPCGN_00790 | rnk | nucleoside diphosphate kinase regulator | 0.61 | HEPCGN_01875 | ldtB | L,D-transpeptidase | — | — |
| Enterobacter sp. TBS_079 | 0.60 | MPMX20_01276 | | Regulator of nucleoside diphosphate kinase | 0.60 | MPMX20_01456 | | putative L,D-transpeptidase YbiS | low | > 85 |
| Enterobacter asburiae PDN3 | 0.58 | EX28DRAFT_2346 | | Transcription elongation factor | 0.61 | EX28DRAFT_2148 | | Uncharacterized protein conserved in bacteria | — | — |
| Shewanella oneidensis MR-1 | 0.43 | SO1935 | rnk | regulator of nucleoside diphosphate kinase (NCBI ptt file) | 0.56 | SO3748 | | LysM domain protein (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.42 | Sama_1433 | | GreA/GreB family elongation factor (RefSeq) | 0.58 | Sama_0726 | | ErfK/YbiS/YcfS/YnhG (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.42 | Shewana3_1714 | | GreA/GreB family elongation factor (RefSeq) | 0.55 | Shewana3_0844 | | ErfK/YbiS/YcfS/YnhG family protein (RefSeq) | low | > 73 |
Not shown: 43 genomes with orthologs for HER17_RS20085 only; 2 genomes with orthologs for HER17_RS17580 only