Conservation of cofitness between HER17_RS08615 and HER17_RS17565 in Pectobacterium carotovorum WPP14

27 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC 1.0 HER17_RS17565 pyruvate:ferredoxin (flavodoxin) oxidoreductase 0.83 5
Rahnella sp. WP5 0.85 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.78 EX31_RS06430 pyruvate:ferredoxin (flavodoxin) oxidoreductase low > 89
Dickeya dianthicola 67-19 0.84 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.88 HGI48_RS03675 pyruvate:ferredoxin (flavodoxin) oxidoreductase low > 71
Dickeya dianthicola ME23 0.84 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.88 DZA65_RS03795 pyruvate:ferredoxin (flavodoxin) oxidoreductase low > 75
Dickeya dadantii 3937 0.84 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.88 DDA3937_RS03575 pyruvate:ferredoxin (flavodoxin) oxidoreductase low > 74
Serratia liquefaciens MT49 0.83 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.82 IAI46_13375 pyruvate:ferredoxin (flavodoxin) oxidoreductase low > 86
Klebsiella michiganensis M5al 0.83 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase 0.80 BWI76_RS12730 pyruvate:ferredoxin (flavodoxin) oxidoreductase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.80 GFF2642 Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) low > 78
Enterobacter asburiae PDN3 0.82 EX28DRAFT_1844 pseudouridine synthase, RluA family 0.80 EX28DRAFT_1018 pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric low > 76
Escherichia coli ECOR27 0.82 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.80 NOLOHH_19545 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase low > 75
Escherichia coli ECRC98 0.82 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.80 JDDGAC_04300 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase low > 86
Escherichia coli BW25113 0.82 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) 0.80 b1378 ydbK fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein (NCBI) low > 76
Escherichia coli ECRC100 0.82 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.80 OKFHMN_01810 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase low > 80
Escherichia fergusonii Becca 0.82 EFB2_02889 Ribosomal large subunit pseudouridine synthase C 0.80 EFB2_02579 Pyruvate-flavodoxin oxidoreductase low > 86
Escherichia coli BL21 0.82 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase 0.80 ECD_01349 pyruvate-flavodoxin oxidoreductase low > 61
Escherichia coli ECRC62 0.82 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.80 BNILDI_18000 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase low > 75
Escherichia coli ECRC102 0.82 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.80 NIAGMN_25945 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C 0.80 OHPLBJKB_02334 Pyruvate-flavodoxin oxidoreductase low > 73
Escherichia coli ECRC99 0.82 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.80 KEDOAH_26625 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase — —
Escherichia coli ECRC101 0.82 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.80 MCAODC_16125 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase low > 87
Escherichia coli ECOR38 0.82 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.80 HEPCGN_26025 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase low > 87
Escherichia coli Nissle 1917 0.81 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.80 ECOLIN_RS08095 pyruvate:ferredoxin (flavodoxin) oxidoreductase low > 55
Enterobacter sp. TBS_079 0.80 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C 0.80 MPMX20_02432 Pyruvate-flavodoxin oxidoreductase low > 85
Vibrio cholerae E7946 ATCC 55056 0.63 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.42 CSW01_16885 pyruvate:ferredoxin (flavodoxin) oxidoreductase low > 62
Marinobacter adhaerens HP15 0.49 HP15_2221 pseudouridine synthase, RluA family 0.52 HP15_3392 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein low > 73
Magnetospirillum magneticum AMB-1 0.26 AMB_RS15620 RluA family pseudouridine synthase 0.54 AMB_RS10035 pyruvate:ferredoxin (flavodoxin) oxidoreductase low > 64
Azospirillum sp. SherDot2 0.24 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C 0.50 MPMX19_04853 Pyruvate-flavodoxin oxidoreductase low > 112
Rhodospirillum rubrum S1H 0.24 Rru_A2659 Pseudouridine synthase, RluD (NCBI) 0.53 Rru_A2398 Pyruvate-ferredoxin (flavodoxin) oxidoreductase (NCBI) — —

Not shown: 55 genomes with orthologs for HER17_RS08615 only; 10 genomes with orthologs for HER17_RS17565 only