Conservation of cofitness between HER17_RS16595 and HER17_RS06280 in Pectobacterium carotovorum WPP14

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS16595 TerC family protein 1.0 HER17_RS06280 tRNA 5-hydroxyuridine modification protein YegQ 0.86 17
Dickeya dadantii 3937 0.85 DDA3937_RS04935 TerC family protein 0.90 DDA3937_RS15295 tRNA 5-hydroxyuridine modification protein YegQ low > 74
Dickeya dianthicola 67-19 0.84 HGI48_RS04945 TerC family protein 0.88 HGI48_RS15375 tRNA 5-hydroxyuridine modification protein YegQ low > 71
Dickeya dianthicola ME23 0.84 DZA65_RS05280 TerC family protein 0.88 DZA65_RS16195 tRNA 5-hydroxyuridine modification protein YegQ low > 75
Serratia liquefaciens MT49 0.81 IAI46_20465 TerC family protein 0.87 IAI46_19015 tRNA 5-hydroxyuridine modification protein YegQ low > 86
Pantoea sp. MT58 0.80 IAI47_03905 TerC family protein 0.81 IAI47_06845 tRNA 5-hydroxyuridine modification protein YegQ low > 76
Erwinia tracheiphila SCR3 0.77 LU632_RS06090 TerC family protein 0.79 LU632_RS08665 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 74
Klebsiella michiganensis M5al 0.77 BWI76_RS23295 tellurium resistance protein TerC 0.85 BWI76_RS19280 U32 family peptidase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.76 GFF1315 FIG003462: membrane protein 0.84 GFF3846 Putative protease low > 78
Escherichia coli ECRC99 0.75 KEDOAH_08145 ygdQ UPF0053 inner membrane protein YgdQ 0.83 KEDOAH_03985 yegQ tRNA 5-hydroxyuridine modification protein YegQ — —
Escherichia coli ECRC62 0.75 BNILDI_10350 ygdQ UPF0053 inner membrane protein YgdQ 0.83 BNILDI_14415 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 75
Escherichia coli ECOR27 0.75 NOLOHH_11870 ygdQ UPF0053 inner membrane protein YgdQ 0.83 NOLOHH_15500 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 75
Escherichia fergusonii Becca 0.75 EFB2_01051 hypothetical protein 0.83 EFB2_01770 23S rRNA 5-hydroxycytidine synthase low > 86
Escherichia coli ECOR38 0.75 HEPCGN_19240 ygdQ UPF0053 inner membrane protein YgdQ 0.83 HEPCGN_02845 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 87
Escherichia coli ECRC101 0.75 MCAODC_10510 ygdQ UPF0053 inner membrane protein YgdQ 0.83 MCAODC_20775 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 87
Escherichia coli Nissle 1917 0.75 ECOLIN_RS15900 TerC family protein 0.83 ECOLIN_RS12250 tRNA 5-hydroxyuridine modification protein YegQ low > 55
Escherichia coli ECRC102 0.75 NIAGMN_17755 ygdQ UPF0053 inner membrane protein YgdQ 0.83 NIAGMN_22110 yegQ tRNA 5-hydroxyuridine modification protein YegQ — —
Escherichia coli BW25113 0.75 b2832 ygdQ predicted inner membrane protein (NCBI) 0.83 b2081 yegQ predicted peptidase (NCBI) low > 76
Escherichia coli ECRC100 0.75 OKFHMN_19985 ygdQ UPF0053 inner membrane protein YgdQ 0.83 OKFHMN_24165 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 80
Escherichia coli ECRC98 0.75 JDDGAC_23650 ygdQ UPF0053 inner membrane protein YgdQ 0.83 JDDGAC_28275 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_00897 hypothetical protein 0.83 OHPLBJKB_01623 putative protease YdcP low > 73
Escherichia coli BL21 0.75 ECD_02680 UPF0053 family inner membrane protein 0.83 ECD_01986 putative peptidase low > 61
Pseudomonas putida KT2440 0.53 PP_2445 conserved membrane protein of unknown function 0.70 PP_2206 putative peptidase low > 96
Pseudomonas fluorescens FW300-N2E2 0.53 Pf6N2E2_4139 Integral membrane protein TerC 0.72 Pf6N2E2_45 Putative protease low > 103
Pseudomonas fluorescens GW456-L13 0.52 PfGW456L13_634 Integral membrane protein TerC 0.73 PfGW456L13_2485 Putative protease low > 87
Pseudomonas sp. S08-1 0.52 OH686_12060 UPF0053 inner membrane protein YgdQ 0.72 OH686_13055 Uncharacterized protease YegQ low > 80
Pseudomonas sp. RS175 0.52 PFR28_04647 hypothetical protein 0.72 PFR28_02843 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_20125 hypothetical protein 0.72 AO353_19800 protease low > 101
Pseudomonas fluorescens FW300-N2C3 0.49 AO356_01795 hypothetical protein 0.71 AO356_21300 protease low > 104
Pseudomonas fluorescens FW300-N1B4 0.49 Pf1N1B4_3938 Integral membrane protein TerC 0.72 Pf1N1B4_3925 Putative protease low > 87

Not shown: 14 genomes with orthologs for HER17_RS16595 only; 23 genomes with orthologs for HER17_RS06280 only