Conservation of cofitness between GFF3722 and GFF5002 in Sphingobium sp. HT1-2

11 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingobium sp. HT1-2 1.0 GFF3722 RNA polymerase sigma factor for flagellar operon 1.0 GFF5002 Acyl-homoserine lactone-binding transcriptional activator, LuxR family 0.60 20
Sphingomonas koreensis DSMZ 15582 0.46 Ga0059261_2081 RNA polymerase sigma factor, FliA/WhiG family 0.27 Ga0059261_0441 DNA-binding HTH domain-containing proteins low > 68
Pseudomonas aeruginosa MRSN321 0.30 DY961_RS05635 fliA;inference=COORDINATES RNA polymerase sigma factor FliA 0.13 DY961_RS21240 qscR;inference=COORDINATES quorum-sensing transcriptional repressor QscR low > 100
Pseudomonas aeruginosa PUPa3 0.30 DQ20_RS47155 fliA;inference=COORDINATES RNA polymerase sigma factor FliA 0.13 DQ20_RS0130700 qscR;inference=COORDINATES quorum-sensing transcriptional repressor QscR low > 101
Pseudomonas aeruginosa PA14 0.30 IKLFDK_06920 flagellar biosynthesis sigma factor FliA 0.13 IKLFDK_09265 quorum-sensing transcriptional repressor QscR low > 98
Pseudomonas lactucae CFBP13502 0.29 GEMAOFIL_04138 RNA polymerase sigma factor FliA 0.10 GEMAOFIL_05019 Transcriptional activator protein AnoR low > 96
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.2832.1 RNA polymerase sigma factor for flagellar operon 0.13 Xcc-8004.1645.1 Transcriptional regulator ahyR/asaR family low > 74
Pseudomonas fluorescens FW300-N2C3 0.28 AO356_03730 flagellar biosynthesis sigma factor 0.13 AO356_28160 hypothetical protein low > 104
Pseudomonas sp. BP01 0.27 JOY50_RS00585 fliA RNA polymerase sigma factor FliA 0.11 JOY50_RS13155 autoinducer binding domain-containing protein low > 84
Pantoea sp. MT58 0.26 IAI47_08160 RNA polymerase sigma factor FliA 0.14 IAI47_12485 transcriptional regulator SdiA low > 76
Ralstonia solanacearum GMI1000 0.26 RS_RS23830 RNA polymerase sigma factor FliA 0.13 RS_RS20830 LuxR family transcriptional regulator low > 80
Ralstonia solanacearum PSI07 0.25 RPSI07_RS06165 RNA polymerase sigma factor FliA 0.12 RPSI07_RS03145 LuxR family transcriptional regulator low > 81

Not shown: 73 genomes with orthologs for GFF3722 only; 4 genomes with orthologs for GFF5002 only