Conservation of cofitness between GFF1012 and GFF2992 in Sphingobium sp. HT1-2

25 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingobium sp. HT1-2 1.0 GFF1012 Sugar:proton symporter 1.0 GFF2992 Two-component transcriptional response regulator SMc02366, LuxR family 0.68 14
Mucilaginibacter yixingensis YX-36 DSM 26809 0.39 ABZR88_RS06180 L-rhamnose/proton symporter RhaT 0.41 ABZR88_RS09450 response regulator transcription factor low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.37 CA265_RS02625 rhamnose/proton symporter RhaT 0.42 CA265_RS03060 DNA-binding response regulator low > 88
Bacteroides stercoris CC31F 0.32 HMPREF1181_RS03505 L-rhamnose/proton symporter RhaT 0.40 HMPREF1181_RS01000 response regulator transcription factor low > 56
Klebsiella michiganensis M5al 0.32 BWI76_RS00700 rhamnose/proton symporter RhaT 0.40 BWI76_RS18590 DNA-binding response regulator low > 92
Bacteroides ovatus ATCC 8483 0.32 BACOVA_03603 L-rhamnose-proton symport protein (RhaT) 0.39 BACOVA_02385 response regulator receiver domain protein low > 96
Klebsiella pneumoniae MKP103 0.31 KDGMDA_09210 L-rhamnose/proton symporter RhaT 0.48 KDGMDA_00710 copper/silver response regulator transcription factor SilR low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF2268 L-rhamnose-proton symporter 0.44 GFF3273 Putative two-component system response regulator YedW low > 78
Bacteroides thetaiotaomicron VPI-5482 0.31 BT3765 L-rhamnose:H+ symporter (from data) 0.39 BT0682 two-component system response regulator (NCBI ptt file) low > 81
Escherichia coli ECOR38 0.31 HEPCGN_12520 rhaT L-rhamnose/proton symporter RhaT 0.48 HEPCGN_00585 cusR copper response regulator transcription factor CusR low > 88
Escherichia coli ECOR27 0.31 NOLOHH_06010 rhaT L-rhamnose/proton symporter RhaT 0.48 NOLOHH_24085 cusR copper response regulator transcription factor CusR low > 76
Escherichia fergusonii Becca 0.31 EFB2_04710 L-rhamnose-proton symporter 0.48 EFB2_03523 Transcriptional regulatory protein CusR low > 86
Escherichia coli Nissle 1917 0.31 ECOLIN_RS22510 L-rhamnose/proton symporter RhaT 0.48 ECOLIN_RS03125 copper response regulator transcription factor CusR — —
Escherichia coli ECRC62 0.31 BNILDI_05515 rhaT L-rhamnose/proton symporter RhaT 0.48 BNILDI_22095 cusR copper response regulator transcription factor CusR low > 75
Escherichia coli BL21 0.31 ECD_03793 L-rhamnose:proton symporter 0.48 ECD_00532 response regulator in two-component regulatory system with CusS low > 61
Pantoea agglomerans CFBP13505 P0401 0.31 PagCFBP13505_RS06480 L-rhamnose/proton symporter RhaT 0.40 PagCFBP13505_RS14010 response regulator transcription factor HprR low > 74
Dickeya dianthicola 67-19 0.31 HGI48_RS01730 L-rhamnose/proton symporter RhaT 0.48 HGI48_RS03485 heavy metal response regulator transcription factor low > 71
Dickeya dianthicola ME23 0.31 DZA65_RS01805 L-rhamnose/proton symporter RhaT 0.48 DZA65_RS03595 copper/silver response regulator transcription factor SilR low > 75
Parabacteroides merdae CL09T00C40 0.30 HMPREF1078_RS01765 L-rhamnose/proton symporter RhaT 0.39 HMPREF1078_RS01665 response regulator transcription factor low > 61
Phocaeicola dorei CL03T12C01 0.30 ABI39_RS03000 L-rhamnose/proton symporter RhaT 0.38 ABI39_RS05370 response regulator transcription factor low > 72
Escherichia coli BW25113 0.30 b3907 rhaT L-rhamnose:proton symporter (NCBI) 0.48 b0571 cusR DNA-binding response regulator in two-component regulatory system with CusS (NCBI) low > 76
Rahnella sp. WP5 0.30 EX31_RS04160 L-rhamnose/proton symporter RhaT 0.45 EX31_RS18870 heavy metal response regulator transcription factor low > 89
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_04143 L-rhamnose-proton symporter 0.48 OHPLBJKB_03138 Transcriptional regulatory protein CusR low > 74
Enterobacter sp. TBS_079 0.30 MPMX20_04560 L-rhamnose-proton symporter 0.48 MPMX20_02319 Transcriptional regulatory protein CusR low > 85
Pectobacterium carotovorum WPP14 0.29 HER17_RS19165 L-rhamnose/proton symporter RhaT 0.46 HER17_RS13650 heavy metal response regulator transcription factor low > 75
Echinicola vietnamensis KMM 6221, DSM 17526 0.23 Echvi_1690 L-rhamnose-proton symport protein (RhaT). 0.44 Echvi_2622 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 79

Not shown: 3 genomes with orthologs for GFF1012 only; 70 genomes with orthologs for GFF2992 only