Conservation of cofitness between GFF4863 and GFF23 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF4863 'LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM' transl_table=11 1.0 GFF23 Methionine ABC transporter substrate-binding protein 0.53 11
Escherichia coli ECOR27 0.96 NOLOHH_12010 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.98 NOLOHH_02405 metQ methionine ABC transporter substrate-binding lipoprotein MetQ low > 75
Escherichia coli ECRC102 0.96 NIAGMN_17900 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.97 NIAGMN_07910 metQ methionine ABC transporter substrate-binding lipoprotein MetQ — —
Escherichia coli ECRC101 0.96 MCAODC_10655 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.97 MCAODC_00575 metQ methionine ABC transporter substrate-binding lipoprotein MetQ low > 87
Escherichia coli ECOR38 0.96 HEPCGN_19385 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.97 HEPCGN_08000 metQ methionine ABC transporter substrate-binding lipoprotein MetQ low > 87
Escherichia coli ECRC99 0.96 KEDOAH_08000 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.97 KEDOAH_18095 metQ methionine ABC transporter substrate-binding lipoprotein MetQ — —
Escherichia coli ECRC98 0.96 JDDGAC_23795 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.97 JDDGAC_13655 metQ methionine ABC transporter substrate-binding lipoprotein MetQ low > 86
Escherichia coli ECRC100 0.96 OKFHMN_20130 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.97 OKFHMN_10060 metQ methionine ABC transporter substrate-binding lipoprotein MetQ low > 80
Escherichia coli ECRC62 0.96 BNILDI_10515 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.98 BNILDI_09265 metQ methionine ABC transporter substrate-binding lipoprotein MetQ low > 75
Escherichia coli BL21 0.96 ECD_02657 23S rRNA C2498 2'-O-ribose methyltransferase, SAM-dependent 0.98 ECD_00196 DL-methionine transporter subunit low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.96 OHPLBJKB_00925 Ribosomal RNA large subunit methyltransferase M 0.98 OHPLBJKB_03464 D-methionine-binding lipoprotein MetQ low > 73
Escherichia coli BW25113 0.96 b2806 ygdE predicted methyltransferase (NCBI) 0.97 b0197 metQ DL-methionine transporter subunit (NCBI) low > 76
Escherichia coli Nissle 1917 0.96 ECOLIN_RS15640 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.97 ECOLIN_RS01085 methionine ABC transporter substrate-binding lipoprotein MetQ — —
Escherichia fergusonii Becca 0.96 EFB2_01111 Ribosomal RNA large subunit methyltransferase M 0.97 EFB2_03846 D-methionine-binding lipoprotein MetQ low > 86
Enterobacter sp. TBS_079 0.93 MPMX20_03669 Ribosomal RNA large subunit methyltransferase M 0.96 MPMX20_00881 D-methionine-binding lipoprotein MetQ low > 85
Klebsiella michiganensis M5al 0.93 BWI76_RS22945 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.95 BWI76_RS05355 methionine ABC transporter substrate-binding protein MetQ low > 92
Enterobacter asburiae PDN3 0.92 EX28DRAFT_2881 Predicted SAM-dependent methyltransferase 0.96 EX28DRAFT_3785 lipoprotein, YaeC family low > 76
Pantoea sp. MT58 0.80 IAI47_04035 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.92 IAI47_15395 MetQ/NlpA family lipoprotein low > 76
Pectobacterium carotovorum WPP14 0.79 HER17_RS16405 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.91 HER17_RS04370 MetQ/NlpA family lipoprotein low > 75
Serratia liquefaciens MT49 0.79 IAI46_20330 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.93 IAI46_20085 MetQ/NlpA family lipoprotein low > 86
Erwinia tracheiphila SCR3 0.77 LU632_RS06265 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.91 LU632_RS19830 MetQ/NlpA family lipoprotein low > 74
Rahnella sp. WP5 0.77 EX31_RS13100 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.89 EX31_RS12890 MetQ/NlpA family lipoprotein low > 89
Dickeya dianthicola ME23 0.77 DZA65_RS05400 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.89 DZA65_RS18000 MetQ/NlpA family lipoprotein low > 75
Dickeya dianthicola 67-19 0.77 HGI48_RS05060 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.89 HGI48_RS16925 MetQ/NlpA family lipoprotein low > 71
Dickeya dadantii 3937 0.77 DDA3937_RS05060 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.90 DDA3937_RS16855 MetQ/NlpA family lipoprotein low > 74
Pseudomonas sp. S08-1 0.45 OH686_02095 23S rRNA (cytidine(2498)-2'-O)-methyltransferase 0.36 OH686_12270 Methionine ABC transporter substrate-binding protein low > 80
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_3403 conserved hypothetical protein 0.35 Psyr_0328 NLPA lipoprotein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_3403 conserved hypothetical protein 0.35 Psyr_0328 NLPA lipoprotein low > 86
Pseudomonas putida KT2440 0.45 PP_2113 Ribosomal RNA large subunit methyltransferase M 0.36 PP_0112 methionine ABC transporter, periplasmic binding protein low > 96
Pseudomonas sp. RS175 0.43 PFR28_01100 Ribosomal RNA large subunit methyltransferase M 0.35 PFR28_04818 Methionine-binding lipoprotein MetQ low > 88
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_4051 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM 0.36 PfGW456L13_604 Methionine ABC transporter substrate-binding protein low > 87
Xanthomonas campestris pv. campestris strain 8004 0.37 Xcc-8004.4242.1 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM 0.35 Xcc-8004.4601.1 Methionine ABC transporter substrate-binding protein low > 74

Not shown: 16 genomes with orthologs for GFF4863 only; 34 genomes with orthologs for GFF23 only