Conservation of cofitness between EX31_RS03165 and EX31_RS09870 in Rahnella sp. WP5

26 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS03165 CdaR family transcriptional regulator 1.0 EX31_RS09870 LapA family protein 0.39 9
Pectobacterium carotovorum WPP14 0.85 HER17_RS05665 CdaR family transcriptional regulator 0.71 HER17_RS09380 LapA family protein low > 75
Dickeya dianthicola ME23 0.84 DZA65_RS17080 CdaR family transcriptional regulator 0.68 DZA65_RS13040 LapA family protein low > 75
Dickeya dadantii 3937 0.84 DDA3937_RS15855 CdaR family transcriptional regulator 0.68 DDA3937_RS12535 LapA family protein low > 74
Dickeya dianthicola 67-19 0.84 HGI48_RS15995 CdaR family transcriptional regulator 0.68 HGI48_RS12590 LapA family protein low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF59 Sugar diacid utilization regulator SdaR 0.71 GFF2706 Inner membrane protein yciS low > 78
Escherichia coli ECOR27 0.83 NOLOHH_02595 cdaR DNA-binding transcriptional regulator CdaR 0.70 NOLOHH_20225 lapA lipopolysaccharide assembly protein LapA low > 75
Escherichia coli ECOR38 0.83 HEPCGN_08200 cdaR DNA-binding transcriptional regulator CdaR 0.70 HEPCGN_25640 lapA lipopolysaccharide assembly protein LapA low > 87
Escherichia coli ECRC62 0.83 BNILDI_09075 cdaR DNA-binding transcriptional regulator CdaR 0.70 BNILDI_18375 lapA lipopolysaccharide assembly protein LapA low > 75
Erwinia tracheiphila SCR3 0.83 LU632_RS19995 CdaR family transcriptional regulator 0.57 LU632_RS12520 lipopolysaccharide assembly protein LapA domain-containing protein low > 74
Escherichia coli Nissle 1917 0.83 ECOLIN_RS00900 DNA-binding transcriptional regulator CdaR 0.71 ECOLIN_RS07720 lipopolysaccharide assembly protein LapA — —
Escherichia fergusonii Becca 0.83 EFB2_03882 Carbohydrate diacid regulator 0.71 EFB2_02646 Lipopolysaccharide assembly protein A low > 86
Escherichia coli BL21 0.83 ECD_00161 carbohydrate diacid regulon transcriptional regulator; autoregulator 0.71 ECD_01256 DUF1049 family inner membrane protein, function unknown — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.83 OHPLBJKB_03500 Carbohydrate diacid regulator 0.71 OHPLBJKB_02403 Lipopolysaccharide assembly protein A low > 73
Escherichia coli ECRC100 0.83 OKFHMN_10250 cdaR DNA-binding transcriptional regulator CdaR 0.69 OKFHMN_02560 lapA lipopolysaccharide assembly protein LapA — —
Escherichia coli BW25113 0.83 b0162 yaeG orf, hypothetical protein (VIMSS) 0.71 b1279 yciS conserved inner membrane protein (NCBI) low > 76
Escherichia coli ECRC98 0.83 JDDGAC_13845 cdaR DNA-binding transcriptional regulator CdaR 0.69 JDDGAC_05105 lapA lipopolysaccharide assembly protein LapA low > 86
Escherichia coli ECRC102 0.83 NIAGMN_08100 cdaR DNA-binding transcriptional regulator CdaR 0.69 NIAGMN_26730 lapA lipopolysaccharide assembly protein LapA — —
Escherichia coli ECRC101 0.83 MCAODC_00765 cdaR DNA-binding transcriptional regulator CdaR 0.69 MCAODC_15705 lapA lipopolysaccharide assembly protein LapA low > 87
Escherichia coli ECRC99 0.83 KEDOAH_17905 cdaR DNA-binding transcriptional regulator CdaR 0.69 KEDOAH_26205 lapA lipopolysaccharide assembly protein LapA — —
Klebsiella michiganensis M5al 0.82 BWI76_RS05185 CdaR family transcriptional regulator 0.71 BWI76_RS11955 hypothetical protein — —
Enterobacter sp. TBS_079 0.82 MPMX20_00848 Carbohydrate diacid regulator 0.71 MPMX20_02496 Lipopolysaccharide assembly protein A low > 85
Enterobacter asburiae PDN3 0.82 EX28DRAFT_3751 Sugar diacid utilization regulator 0.70 EX28DRAFT_0952 Predicted membrane protein low > 76
Pantoea sp. MT58 0.81 IAI47_15555 CdaR family transcriptional regulator 0.67 IAI47_09265 LapA family protein low > 76
Shewanella oneidensis MR-1 0.43 SO1774 hypothetical Sugar diacid utilization regulator (NCBI ptt file) 0.33 SO2400 conserved hypothetical protein (NCBI ptt file) — —
Shewanella loihica PV-4 0.43 Shew_2528 transcriptional regulator, CdaR (RefSeq) 0.32 Shew_1956 hypothetical protein (RefSeq) — —
Serratia liquefaciens MT49 0.34 IAI46_05255 helix-turn-helix domain-containing protein 0.65 IAI46_13935 LapA family protein low > 86

Not shown: 15 genomes with orthologs for EX31_RS03165 only; 1 genomes with orthologs for EX31_RS09870 only