Conservation of cofitness between EX31_RS17905 and EX31_RS05040 in Rahnella sp. WP5

21 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS17905 HTH-type transcriptional regulator PuuR 1.0 EX31_RS05040 helix-turn-helix domain-containing protein 0.28 15
Serratia liquefaciens MT49 0.81 IAI46_10550 HTH-type transcriptional regulator PuuR 0.41 IAI46_21160 helix-turn-helix domain-containing protein low > 86
Klebsiella michiganensis M5al 0.79 BWI76_RS10700 XRE family transcriptional regulator 0.42 BWI76_RS13595 transcriptional regulator low > 92
Escherichia coli ECRC100 0.79 OKFHMN_02435 puuR HTH-type transcriptional regulator PuuR 0.31 OKFHMN_16010 yiaG HTH-type transcriptional regulator low > 80
Escherichia coli ECRC101 0.79 MCAODC_15835 puuR HTH-type transcriptional regulator PuuR 0.31 MCAODC_06525 yiaG HTH-type transcriptional regulator low > 87
Escherichia coli ECRC99 0.79 KEDOAH_26340 puuR HTH-type transcriptional regulator PuuR 0.31 KEDOAH_12140 yiaG HTH-type transcriptional regulator — —
Escherichia coli ECRC98 0.79 JDDGAC_04980 puuR HTH-type transcriptional regulator PuuR 0.31 JDDGAC_19640 yiaG HTH-type transcriptional regulator low > 86
Escherichia coli ECRC102 0.79 NIAGMN_26605 puuR HTH-type transcriptional regulator PuuR 0.31 NIAGMN_13770 yiaG HTH-type transcriptional regulator — —
Escherichia coli BW25113 0.79 b1299 puuR DNA-binding transcriptional repressor (NCBI) 0.31 b3555 yiaG predicted transcriptional regulator (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.79 OHPLBJKB_02383 HTH-type transcriptional regulator PuuR 0.31 OHPLBJKB_00151 hypothetical protein low > 73
Escherichia coli BL21 0.79 ECD_01276 repressor for the divergent puu operons, putrescine inducible 0.31 ECD_03405 HTH_CROC1 family putative transcriptional regulator low > 61
Escherichia coli ECRC62 0.79 BNILDI_18270 puuR HTH-type transcriptional regulator PuuR 0.32 BNILDI_05415 transcriptional regulator low > 75
Escherichia coli ECOR38 0.79 HEPCGN_25765 puuR HTH-type transcriptional regulator PuuR 0.45 HEPCGN_15855 yiaG transcriptional regulator low > 87
Escherichia coli ECOR27 0.79 NOLOHH_20120 puuR HTH-type transcriptional regulator PuuR 0.32 NOLOHH_06115 transcriptional regulator low > 75
Pantoea sp. MT58 0.68 IAI47_07115 HTH-type transcriptional regulator PuuR 0.28 IAI47_18685 HTH-type transcriptional regulator low > 76
Pseudomonas fluorescens GW456-L13 0.37 PfGW456L13_815 Putrescine utilization regulator 0.29 PfGW456L13_391 Helix-turn-helix motif — —
Pseudomonas putida KT2440 0.37 PP_5268 DNA-binding transcriptional repressor PuuR-putrescine 0.29 PP_1198 transcriptional regulator, Cro/CI family (higA antitoxin like) low > 96
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_4394 Putrescine utilization regulator 0.30 Pf6N2E2_2244 Putative merR family bacterial regulatory protein — —
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_12635 XRE family transcriptional regulator 0.29 AO356_01875 Cro/Cl family transcriptional regulator low > 104
Shewanella oneidensis MR-1 0.36 SO1265 transcriptional regulator, putative (NCBI ptt file) 0.35 SOA0068 conserved hypothetical protein (NCBI ptt file) — —
Bosea sp. OAE506 0.31 ABIE41_RS05345 cupin domain-containing protein 0.33 ABIE41_RS21935 helix-turn-helix domain-containing protein — —
Rhodospirillum rubrum S1H 0.29 Rru_A2042 Transcriptional Regulator, XRE family with Cupin sensor domain (NCBI) 0.32 Rru_A0304 Transcriptional Regulator, XRE family (NCBI) — —

Not shown: 22 genomes with orthologs for EX31_RS17905 only; 6 genomes with orthologs for EX31_RS05040 only