Conservation of cofitness between ECD_03418 and ECD_00184 in Escherichia coli BL21

20 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03418 D-xylose transporter subunit 1.0 ECD_00184 lysine decarboxylase 2, constitutive 0.70 2
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00138 D-xylose-binding periplasmic protein 1.00 OHPLBJKB_03477 Constitutive lysine decarboxylase low > 73
Escherichia coli ECRC101 1.00 MCAODC_06465 xylF D-xylose ABC transporter substrate-binding protein 1.00 MCAODC_00640 ldcC lysine decarboxylase LdcC low > 87
Escherichia coli ECRC98 1.00 JDDGAC_19580 xylF D-xylose ABC transporter substrate-binding protein 1.00 JDDGAC_13720 ldcC lysine decarboxylase LdcC low > 86
Escherichia coli ECRC102 1.00 NIAGMN_13710 xylF D-xylose ABC transporter substrate-binding protein 1.00 NIAGMN_07975 ldcC lysine decarboxylase LdcC — —
Escherichia coli ECRC99 1.00 KEDOAH_12200 xylF D-xylose ABC transporter substrate-binding protein 1.00 KEDOAH_18030 ldcC lysine decarboxylase LdcC — —
Escherichia coli BW25113 1.00 b3566 xylF D-xylose transporter subunit (NCBI) 1.00 b0186 ldcC lysine decarboxylase 2, constitutive (NCBI) low > 76
Escherichia coli ECRC100 1.00 OKFHMN_15950 xylF D-xylose ABC transporter substrate-binding protein 1.00 OKFHMN_10125 ldcC lysine decarboxylase LdcC low > 80
Escherichia fergusonii Becca 1.00 EFB2_00241 D-xylose-binding periplasmic protein 0.99 EFB2_03858 Constitutive lysine decarboxylase low > 86
Escherichia coli ECOR27 1.00 NOLOHH_07895 xylF D-xylose ABC transporter substrate-binding protein 1.00 NOLOHH_02470 ldcC lysine decarboxylase LdcC low > 75
Escherichia coli ECRC62 1.00 BNILDI_03650 xylF D-xylose ABC transporter substrate-binding protein 1.00 BNILDI_09200 ldcC lysine decarboxylase LdcC low > 75
Escherichia coli ECOR38 1.00 HEPCGN_14835 xylF D-xylose ABC transporter substrate-binding protein 0.99 HEPCGN_08080 ldcC lysine decarboxylase LdcC low > 87
Escherichia coli Nissle 1917 1.00 ECOLIN_RS20395 D-xylose ABC transporter substrate-binding protein 0.99 ECOLIN_RS01010 lysine decarboxylase LdcC low > 55
Klebsiella michiganensis M5al 0.91 BWI76_RS27030 D-xylose transporter subunit XylF 0.89 BWI76_RS05300 lysine decarboxylase LdcC low > 92
Enterobacter sp. TBS_079 0.89 MPMX20_00164 D-xylose-binding periplasmic protein 0.90 MPMX20_00870 Constitutive lysine decarboxylase low > 85
Enterobacter asburiae PDN3 0.89 EX28DRAFT_3831 D-xylose ABC transporter, substrate-binding protein 0.90 EX28DRAFT_3774 Arginine/lysine/ornithine decarboxylases low > 76
Rahnella sp. WP5 0.84 EX31_RS09760 D-xylose ABC transporter substrate-binding protein 0.81 EX31_RS12950 lysine decarboxylase LdcC 0.35 31
Pantoea sp. MT58 0.83 IAI47_00190 D-xylose ABC transporter substrate-binding protein 0.84 IAI47_15445 lysine decarboxylase LdcC low > 76
Serratia liquefaciens MT49 0.82 IAI46_00285 D-xylose ABC transporter substrate-binding protein 0.82 IAI46_20175 lysine decarboxylase LdcC low > 86
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS22460 xylose ABC transporter substrate-binding protein 0.34 HSERO_RS17280 lysine decarboxylase — —
Sinorhizobium meliloti 1021 0.37 SM_b20902 sugar uptake ABC transporter substrate-binding protein precursor 0.36 SMa0682 decarboxylase (lysine, ornithine, arginine) low > 103

Not shown: 31 genomes with orthologs for ECD_03418 only; 2 genomes with orthologs for ECD_00184 only