Conservation of cofitness between CSW01_07180 and CSW01_17420 in Vibrio cholerae E7946 ATCC 55056

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07180 tRNA 2-thiocytidine(32) synthetase TtcA 1.0 CSW01_17420 transcriptional regulator 0.60 12
Escherichia coli ECRC62 0.77 BNILDI_18020 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.39 BNILDI_11270 ygaV putative HTH-type transcriptional regulator YgaV 0.55 73
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_02337 tRNA-cytidine(32) 2-sulfurtransferase 0.39 OHPLBJKB_01065 putative HTH-type transcriptional regulator YgaV 0.50 42
Escherichia coli ECRC101 0.77 MCAODC_16100 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.39 MCAODC_11405 ygaV putative HTH-type transcriptional regulator YgaV low > 88
Escherichia coli ECRC99 0.77 KEDOAH_26600 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.39 KEDOAH_07255 ygaV putative HTH-type transcriptional regulator YgaV — —
Escherichia coli Nissle 1917 0.77 ECOLIN_RS08065 tRNA 2-thiocytidine(32) synthetase TtcA 0.38 ECOLIN_RS14870 metalloregulator ArsR/SmtB family transcription factor — —
Escherichia coli BL21 0.77 ECD_01321 tRNA s(2)C32 thioltransferase, iron sulfur cluster protein 0.39 ECD_02523 tributyltin-inducible repressor of ygaVP low > 61
Escherichia coli ECOR27 0.77 NOLOHH_19870 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.39 NOLOHH_12710 ygaV putative HTH-type transcriptional regulator YgaV low > 76
Escherichia coli ECRC102 0.77 NIAGMN_26325 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.39 NIAGMN_18650 ygaV putative HTH-type transcriptional regulator YgaV low > 80
Escherichia coli BW25113 0.77 b1344 ydaO predicted C32 tRNA thiolase (NCBI) 0.39 b2667 ygaV predicted DNA-binding transcriptional regulator (NCBI) low > 76
Escherichia coli ECRC100 0.76 OKFHMN_02155 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.39 OKFHMN_20885 ygaV putative HTH-type transcriptional regulator YgaV — —
Escherichia coli ECOR38 0.76 HEPCGN_26005 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.39 HEPCGN_20180 ygaV putative HTH-type transcriptional regulator YgaV low > 88
Escherichia fergusonii Becca 0.76 EFB2_02583 tRNA-cytidine(32) 2-sulfurtransferase 0.38 EFB2_01263 putative HTH-type transcriptional regulator YgaV low > 86
Dickeya dianthicola ME23 0.76 DZA65_RS12850 tRNA 2-thiocytidine(32) synthetase TtcA 0.38 DZA65_RS01015 helix-turn-helix transcriptional regulator low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.76 GFF2648 tRNA(Cytosine32)-2-thiocytidine synthetase 0.37 GFF1572 Transcriptional regulator, ArsR family low > 78
Escherichia coli ECRC98 0.76 JDDGAC_04715 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.39 JDDGAC_24545 ygaV putative HTH-type transcriptional regulator YgaV low > 87
Dickeya dianthicola 67-19 0.76 HGI48_RS12410 tRNA 2-thiocytidine(32) synthetase TtcA 0.38 HGI48_RS00955 helix-turn-helix transcriptional regulator low > 71
Serratia liquefaciens MT49 0.75 IAI46_13420 tRNA 2-thiocytidine(32) synthetase TtcA 0.39 IAI46_09640 winged helix-turn-helix transcriptional regulator low > 86
Acidovorax sp. GW101-3H11 0.62 Ac3H11_1817 tRNA(Cytosine32)-2-thiocytidine synthetase 0.39 Ac3H11_2264 Transcriptional regulator, ArsR family low > 79
Ralstonia solanacearum IBSBF1503 0.61 RALBFv3_RS10245 tRNA 2-thiocytidine(32) synthetase TtcA 0.40 RALBFv3_RS02060 transcriptional regulator low > 76
Ralstonia solanacearum UW163 0.61 UW163_RS03335 tRNA 2-thiocytidine(32) synthetase TtcA 0.40 UW163_RS15385 transcriptional regulator — —
Herbaspirillum seropedicae SmR1 0.61 HSERO_RS22035 tRNA 2-thiocytidine biosynthesis protein TtcA 0.29 HSERO_RS11595 ArsR family transcriptional regulator low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.60 GFF1658 tRNA(Cytosine32)-2-thiocytidine synthetase 0.36 GFF3124 Transcriptional regulator, ArsR family low > 90
Dechlorosoma suillum PS 0.60 Dsui_0695 putative ATPase of the PP-loop superfamily implicated in cell cycle control 0.34 Dsui_1272 putative transcriptional regulator low > 51
Variovorax sp. OAS795 0.59 ABID97_RS06505 tRNA 2-thiocytidine(32) synthetase TtcA 0.26 ABID97_RS21605 metalloregulator ArsR/SmtB family transcription factor low > 91
Methylophilus sp. DMC18 0.58 GFF1541 tRNA-cytidine(32) 2-sulfurtransferase 0.37 GFF343 Biofilm growth-associated repressor low > 43
Acinetobacter baumannii LAC-4 0.55 RR41_RS04315 tRNA 2-thiocytidine(32) synthetase TtcA 0.35 RR41_RS11965 metalloregulator ArsR/SmtB family transcription factor — —
Acinetobacter radioresistens SK82 0.54 MPMX26_00810 tRNA-cytidine(32) 2-sulfurtransferase 0.38 MPMX26_03153 Biofilm growth-associated repressor low > 36
Sinorhizobium meliloti 1021 0.46 SMc00534 C32 tRNA thiolase 0.45 SMa1056 transcriptional regulator low > 103
Agrobacterium fabrum C58 0.45 Atu1858 hypothetical protein 0.45 Atu3466 ArsR family transcriptional regulator low > 89

Not shown: 57 genomes with orthologs for CSW01_07180 only; 7 genomes with orthologs for CSW01_17420 only