Conservation of cofitness between CSW01_03400 and CSW01_13625 in Vibrio cholerae E7946 ATCC 55056

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03400 tRNA pseudouridine(55) synthase TruB 1.0 CSW01_13625 C4-dicarboxylate ABC transporter 0.48 18
Serratia liquefaciens MT49 0.72 IAI46_01945 tRNA pseudouridine(55) synthase TruB 0.54 IAI46_01475 anaerobic C4-dicarboxylate transporter low > 87
Dickeya dadantii 3937 0.71 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB 0.60 DDA3937_RS02715 anaerobic C4-dicarboxylate transporter low > 74
Dickeya dianthicola 67-19 0.70 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB 0.60 HGI48_RS02690 anaerobic C4-dicarboxylate transporter low > 71
Dickeya dianthicola ME23 0.69 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB 0.60 DZA65_RS02845 anaerobic C4-dicarboxylate transporter low > 75
Pantoea agglomerans CFBP13505 P0401 0.68 PagCFBP13505_RS09110 tRNA pseudouridine(55) synthase TruB 0.60 PagCFBP13505_RS09495 anaerobic C4-dicarboxylate transporter low > 74
Pectobacterium carotovorum WPP14 0.68 HER17_RS18200 tRNA pseudouridine(55) synthase TruB 0.59 HER17_RS18840 anaerobic C4-dicarboxylate transporter low > 75
Klebsiella michiganensis M5al 0.68 BWI76_RS25080 tRNA pseudouridine(55) synthase 0.62 BWI76_RS02325 anaerobic C4-dicarboxylate transporter low > 92
Pantoea sp. MT58 0.67 IAI47_17015 tRNA pseudouridine(55) synthase TruB 0.60 IAI47_17325 anaerobic C4-dicarboxylate transporter low > 76
Erwinia amylovora T8 0.67 OLJFJH_07250 tRNA pseudouridine(55) synthase TruB 0.58 OLJFJH_02620 C4-dicarboxylate ABC transporter low > 58
Escherichia coli ECRC100 0.67 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB 0.54 OKFHMN_12440 dcuA anaerobic C4-dicarboxylate transporter DcuA low > 79
Escherichia coli ECRC98 0.67 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB 0.54 JDDGAC_16075 dcuA anaerobic C4-dicarboxylate transporter DcuA low > 87
Escherichia coli ECRC102 0.67 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB 0.54 NIAGMN_10285 dcuA anaerobic C4-dicarboxylate transporter DcuA low > 80
Escherichia coli Nissle 1917 0.67 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB 0.54 ECOLIN_RS24040 anaerobic C4-dicarboxylate transporter DcuA low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_00534 tRNA pseudouridine synthase B 0.54 OHPLBJKB_03905 Anaerobic C4-dicarboxylate transporter DcuA low > 74
Escherichia coli BW25113 0.67 b3166 truB tRNA pseudouridine synthase B (NCBI) 0.54 b4138 dcuA C4-dicarboxylate antiporter (NCBI) low > 76
Escherichia coli BL21 0.67 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase 0.54 ECD_04008 C4-dicarboxylate antiporter low > 61
Escherichia coli ECRC99 0.67 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB 0.54 KEDOAH_15725 dcuA anaerobic C4-dicarboxylate transporter DcuA — —
Escherichia coli ECOR38 0.67 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB 0.54 HEPCGN_10665 dcuA anaerobic C4-dicarboxylate transporter DcuA low > 88
Escherichia coli ECRC101 0.67 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB 0.54 MCAODC_02950 dcuA anaerobic C4-dicarboxylate transporter DcuA low > 87
Klebsiella pneumoniae MKP103 0.67 KDGMDA_05890 tRNA pseudouridine(55) synthase TruB 0.62 KDGMDA_10815 C4-dicarboxylate ABC transporter low > 95
Escherichia fergusonii Becca 0.67 EFB2_00657 tRNA pseudouridine synthase B 0.54 EFB2_04397 Anaerobic C4-dicarboxylate transporter DcuA low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.54 GFF2014 C4-dicarboxylate transporter DcuA low > 78
Escherichia coli ECRC62 0.67 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB 0.54 BNILDI_06785 dcuA anaerobic C4-dicarboxylate transporter DcuA low > 75
Escherichia coli ECOR27 0.67 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB 0.54 NOLOHH_04705 dcuA anaerobic C4-dicarboxylate transporter DcuA low > 76
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3217 tRNA pseudouridine(55) synthase 0.62 EX28DRAFT_3335 anaerobic c4-dicarboxylate membrane transporter family protein low > 76
Enterobacter sp. TBS_079 0.66 MPMX20_04071 tRNA pseudouridine synthase B 0.62 MPMX20_00418 Anaerobic C4-dicarboxylate transporter DcuA low > 85
Erwinia tracheiphila SCR3 0.66 LU632_RS21050 truB tRNA pseudouridine(55) synthase TruB 0.60 LU632_RS01845 anaerobic C4-dicarboxylate transporter low > 73
Erwinia tracheiphila HP pepo 2.2 0.65 IJEDHG_13945 truB tRNA pseudouridine(55) synthase TruB 0.60 IJEDHG_07060 C4-dicarboxylate ABC transporter low > 61
Rahnella sp. WP5 0.65 EX31_RS08530 tRNA pseudouridine(55) synthase TruB 0.52 EX31_RS08970 anaerobic C4-dicarboxylate transporter low > 89

Not shown: 71 genomes with orthologs for CSW01_03400 only; 0 genomes with orthologs for CSW01_13625 only