Conservation of cofitness between CSW01_04550 and CSW01_10815 in Vibrio cholerae E7946 ATCC 55056

24 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04550 pseudouridine synthase 1.0 CSW01_10815 Cys-tRNA(Pro) deacylase 0.39 10
Shewanella loihica PV-4 0.38 Shew_2644 hypothetical protein (RefSeq) 0.42 Shew_0016 ybaK/ebsC protein (RefSeq) — —
Pectobacterium carotovorum WPP14 0.37 HER17_RS16370 YqcC family protein 0.57 HER17_RS15635 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 75
Serratia liquefaciens MT49 0.36 IAI46_20305 YqcC family protein 0.55 IAI46_05300 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 87
Erwinia tracheiphila SCR3 0.35 LU632_RS06290 YqcC family protein 0.51 LU632_RS15310 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 73
Erwinia tracheiphila HP pepo 2.2 0.35 IJEDHG_17315 tRNA pseudouridine synthase C 0.50 IJEDHG_01120 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 61
Pseudomonas sp. S08-1 0.34 OH686_08140 Uncharacterized protein YqcC 0.52 OH686_20370 Cys-tRNA(Pro) deacylase YbaK low > 80
Erwinia amylovora T8 0.33 OLJFJH_09215 tRNA pseudouridine synthase C 0.54 OLJFJH_17720 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 58
Enterobacter asburiae PDN3 0.32 EX28DRAFT_2873 Uncharacterized protein conserved in bacteria 0.53 EX28DRAFT_2477 Cys-tRNA(Pro) deacylase low > 76
Pseudomonas segetis P6 0.30 ACVTMO_RS06310 YqcC family protein 0.45 ACVTMO_RS07095 ybaK Cys-tRNA(Pro) deacylase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF4847 Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C) 0.53 GFF4401 Cys-tRNA(Pro) deacylase YbaK low > 78
Shewanella oneidensis MR-1 0.29 SO1619 conserved hypothetical protein (NCBI ptt file) 0.50 SO1124 conserved hypothetical protein TIGR00011 (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.29 Shewana3_2825 dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) 0.50 Shewana3_0957 ybaK/ebsC protein (RefSeq) low > 73
Pseudomonas fluorescens GW456-L13 0.29 PfGW456L13_1537 Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C) 0.52 PfGW456L13_1736 Cys-tRNA(Pro) deacylase YbaK low > 87
Pseudomonas stutzeri RCH2 0.27 Psest_1034 Uncharacterized protein conserved in bacteria 0.55 Psest_1454 ybaK/ebsC protein — —
Escherichia coli ECOR38 0.27 HEPCGN_19460 tRNA pseudouridine synthase C 0.55 HEPCGN_06725 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_00939 putative protein YqcC 0.55 OHPLBJKB_03193 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 74
Escherichia coli BL21 0.27 ECD_02637 DUF446 family protein 0.55 ECD_00432 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase low > 61
Escherichia coli ECRC98 0.26 JDDGAC_23870 tRNA pseudouridine synthase C 0.55 JDDGAC_11750 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 87
Escherichia coli ECRC100 0.26 OKFHMN_20205 tRNA pseudouridine synthase C 0.55 OKFHMN_08105 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 79
Escherichia coli ECRC99 0.26 KEDOAH_07925 tRNA pseudouridine synthase C 0.55 KEDOAH_19865 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK — —
Escherichia coli ECRC101 0.26 MCAODC_10730 tRNA pseudouridine synthase C 0.55 MCAODC_27325 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 87
Escherichia coli ECRC102 0.26 NIAGMN_17975 tRNA pseudouridine synthase C 0.55 NIAGMN_06155 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 80
Escherichia fergusonii Becca 0.26 EFB2_01125 putative protein YqcC 0.56 EFB2_03577 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 86
Escherichia coli Nissle 1917 0.26 ECOLIN_RS15555 YqcC family protein 0.56 ECOLIN_RS02850 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK — —

Not shown: 1 genomes with orthologs for CSW01_04550 only; 64 genomes with orthologs for CSW01_10815 only