Conservation of cofitness between CSW01_03320 and CSW01_09840 in Vibrio cholerae E7946 ATCC 55056

27 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03320 serine-type D-Ala-D-Ala carboxypeptidase 1.0 CSW01_09840 o-succinylbenzoate--CoA ligase 0.50 17
Klebsiella pneumoniae MKP103 0.33 KDGMDA_05980 serine-type D-Ala-D-Ala carboxypeptidase 0.33 KDGMDA_26970 o-succinylbenzoate--CoA ligase low > 95
Klebsiella michiganensis M5al 0.32 BWI76_RS25165 serine-type D-Ala-D-Ala carboxypeptidase 0.33 BWI76_RS20055 2-succinylbenzoate-CoA ligase low > 92
Dickeya dianthicola 67-19 0.32 HGI48_RS03180 serine-type D-Ala-D-Ala carboxypeptidase 0.34 HGI48_RS05980 o-succinylbenzoate--CoA ligase low > 71
Enterobacter sp. TBS_079 0.32 MPMX20_04086 D-alanyl-D-alanine carboxypeptidase DacB 0.35 MPMX20_03196 2-succinylbenzoate--CoA ligase low > 85
Dickeya dianthicola ME23 0.32 DZA65_RS03175 serine-type D-Ala-D-Ala carboxypeptidase 0.34 DZA65_RS06315 o-succinylbenzoate--CoA ligase low > 75
Enterobacter asburiae PDN3 0.32 EX28DRAFT_3234 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family 0.34 EX28DRAFT_0344 O-succinylbenzoate-CoA ligase low > 76
Pectobacterium carotovorum WPP14 0.32 HER17_RS18335 serine-type D-Ala-D-Ala carboxypeptidase 0.34 HER17_RS15535 o-succinylbenzoate--CoA ligase low > 75
Escherichia coli ECOR27 0.32 NOLOHH_09840 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.32 NOLOHH_14580 menE o-succinylbenzoate--CoA ligase low > 76
Escherichia coli BW25113 0.32 b3182 dacB D-alanyl-D-alanine carboxypeptidase (NCBI) 0.32 b2260 menE O-succinylbenzoic acid--CoA ligase (NCBI) low > 76
Escherichia fergusonii Becca 0.32 EFB2_00641 D-alanyl-D-alanine carboxypeptidase DacB 0.32 EFB2_01595 2-succinylbenzoate--CoA ligase low > 86
Escherichia coli ECOR38 0.32 HEPCGN_16915 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.32 HEPCGN_22170 menE o-succinylbenzoate--CoA ligase 0.42 14
Escherichia coli ECRC62 0.32 BNILDI_01695 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.32 BNILDI_13495 menE o-succinylbenzoate--CoA ligase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_00518 D-alanyl-D-alanine carboxypeptidase DacB 0.32 OHPLBJKB_01450 2-succinylbenzoate--CoA ligase low > 74
Escherichia coli BL21 0.32 ECD_03047 D-alanyl-D-alanine carboxypeptidase 0.32 ECD_02187 O-succinylbenzoate-CoA ligase low > 61
Escherichia coli Nissle 1917 0.32 ECOLIN_RS18325 serine-type D-Ala-D-Ala carboxypeptidase 0.32 ECOLIN_RS13165 o-succinylbenzoate--CoA ligase low > 55
Dickeya dadantii 3937 0.32 DDA3937_RS03010 serine-type D-Ala-D-Ala carboxypeptidase 0.33 DDA3937_RS05935 o-succinylbenzoate--CoA ligase low > 74
Escherichia coli ECRC99 0.32 KEDOAH_10110 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.32 KEDOAH_05240 menE o-succinylbenzoate--CoA ligase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.32 GFF2924 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.34 GFF1866 O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26) 0.55 78
Escherichia coli ECRC98 0.32 JDDGAC_21665 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.32 JDDGAC_26920 menE o-succinylbenzoate--CoA ligase low > 87
Escherichia coli ECRC102 0.32 NIAGMN_15800 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.32 NIAGMN_20725 menE o-succinylbenzoate--CoA ligase low > 80
Escherichia coli ECRC100 0.32 OKFHMN_18040 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.32 OKFHMN_22955 menE o-succinylbenzoate--CoA ligase low > 79
Escherichia coli ECRC101 0.32 MCAODC_08560 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.32 MCAODC_13995 menE o-succinylbenzoate--CoA ligase low > 87
Erwinia tracheiphila HP pepo 2.2 0.31 IJEDHG_13860 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.28 IJEDHG_18190 menE o-succinylbenzoate--CoA ligase low > 61
Erwinia tracheiphila SCR3 0.31 LU632_RS21170 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.28 LU632_RS08125 menE o-succinylbenzoate--CoA ligase low > 73
Rahnella sp. WP5 0.31 EX31_RS08600 serine-type D-Ala-D-Ala carboxypeptidase 0.35 EX31_RS19335 o-succinylbenzoate--CoA ligase low > 89
Serratia liquefaciens MT49 0.31 IAI46_01875 serine-type D-Ala-D-Ala carboxypeptidase 0.32 IAI46_17540 o-succinylbenzoate--CoA ligase low > 87
Shewanella oneidensis MR-1 0.24 SO2394 dacB penicillin-binding protein 4 (NCBI ptt file) 0.24 SO4576 O-succinylbenzoic acid--CoA ligase, putative (NCBI ptt file) low > 76

Not shown: 31 genomes with orthologs for CSW01_03320 only; 4 genomes with orthologs for CSW01_09840 only