Conservation of cofitness between CSW01_14325 and CSW01_06405 in Vibrio cholerae E7946 ATCC 55056

27 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_14325 peptidase 1.0 CSW01_06405 murein L,D-transpeptidase 0.51 8
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF3396 L,D-transpeptidase YcfS 0.25 GFF3682 L,D-transpeptidase YcbB low > 78
Klebsiella michiganensis M5al 0.45 BWI76_RS11200 transpeptidase 0.25 BWI76_RS09850 L,D-transpeptidase low > 92
Enterobacter sp. TBS_079 0.45 MPMX20_01794 putative L,D-transpeptidase YcfS 0.26 MPMX20_01583 putative L,D-transpeptidase YcbB low > 85
Escherichia coli ECRC99 0.44 KEDOAH_24280 ldtC L,D-transpeptidase LdtC 0.24 KEDOAH_22335 ldtD L,D-transpeptidase — —
Escherichia coli ECRC100 0.44 OKFHMN_03475 ldtC L,D-transpeptidase LdtC 0.24 OKFHMN_05400 ldtD L,D-transpeptidase low > 79
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_02553 putative L,D-transpeptidase YcfS 0.24 OHPLBJKB_02742 hypothetical protein low > 74
Escherichia coli ECRC101 0.44 MCAODC_22835 ldtC L,D-transpeptidase LdtC 0.24 MCAODC_24790 ldtD L,D-transpeptidase low > 87
Escherichia coli ECRC62 0.44 BNILDI_19165 ldtC L,D-transpeptidase LdtC 0.24 BNILDI_20215 ldtD L,D-transpeptidase low > 75
Escherichia coli ECRC102 0.44 NIAGMN_24355 ldtC L,D-transpeptidase LdtC 0.24 NIAGMN_03120 ldtD L,D-transpeptidase low > 80
Escherichia coli BL21 0.44 ECD_01109 L,D-transpeptidase linking Lpp to murein 0.24 ECD_00929 murein L,D-transpeptidase low > 61
Escherichia coli ECRC98 0.44 JDDGAC_07135 ldtC L,D-transpeptidase LdtC 0.24 JDDGAC_09010 ldtD L,D-transpeptidase low > 87
Escherichia coli ECOR27 0.44 NOLOHH_21000 ldtC L,D-transpeptidase LdtC 0.25 NOLOHH_21960 ldtD L,D-transpeptidase low > 76
Enterobacter asburiae PDN3 0.44 EX28DRAFT_1817 Uncharacterized protein conserved in bacteria 0.26 EX28DRAFT_2011 Uncharacterized protein conserved in bacteria low > 76
Escherichia fergusonii Becca 0.44 EFB2_02862 putative L,D-transpeptidase YcfS 0.24 EFB2_03139 putative L,D-transpeptidase YcbB low > 86
Escherichia coli BW25113 0.44 b1113 ycfS hypothetical protein (NCBI) 0.24 b0925 ycbB predicted carboxypeptidase (NCBI) low > 76
Escherichia coli Nissle 1917 0.44 ECOLIN_RS06420 L,D-transpeptidase LdtC 0.24 ECOLIN_RS04895 L,D-transpeptidase low > 55
Escherichia coli ECOR38 0.44 HEPCGN_24010 ldtC L,D-transpeptidase LdtC 0.24 HEPCGN_23125 ldtD L,D-transpeptidase low > 88
Pantoea agglomerans CFBP13505 P0401 0.43 PagCFBP13505_RS17740 L,D-transpeptidase 0.26 PagCFBP13505_RS04550 L,D-transpeptidase low > 74
Pantoea sp. MT58 0.43 IAI47_10850 L,D-transpeptidase family protein 0.25 IAI47_12780 L,D-transpeptidase low > 76
Pectobacterium carotovorum WPP14 0.43 HER17_RS08950 L,D-transpeptidase family protein 0.25 HER17_RS12045 L,D-transpeptidase low > 75
Dickeya dianthicola ME23 0.42 DZA65_RS13280 L,D-transpeptidase family protein 0.26 DZA65_RS13465 L,D-transpeptidase 0.42 61
Dickeya dianthicola 67-19 0.42 HGI48_RS12815 L,D-transpeptidase family protein 0.26 HGI48_RS13005 L,D-transpeptidase low > 71
Klebsiella pneumoniae MKP103 0.42 KDGMDA_24140 murein L D-transpeptidase 0.25 KDGMDA_18050 L D-transpeptidase 0.36 23
Dickeya dadantii 3937 0.42 DDA3937_RS12750 L,D-transpeptidase family protein 0.25 DDA3937_RS12930 L,D-transpeptidase 0.47 28
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_2474 ErfK/YbiS/YcfS/YnhG family protein 0.16 Pf6N2E2_1111 cell wall degradation protein low > 103
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_03215 hypothetical protein 0.16 AO356_26185 peptidoglycan-binding protein low > 104
Pseudomonas lactucae CFBP13502 0.35 GEMAOFIL_01816 hypothetical protein 0.16 GEMAOFIL_03475 putative L,D-transpeptidase YcbB low > 96

Not shown: 27 genomes with orthologs for CSW01_14325 only; 5 genomes with orthologs for CSW01_06405 only