Homologs of ABI39_RS09110 from Phocaeicola dorei CL03T12C01

RNA polymerase sigma-70 factor
SEED: RNA polymerase ECF-type sigma factor

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Phocaeicola dorei CL03T12C01 ABI39_RS09110 RNA polymerase sigma-70 factor insig. 100 100
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS11925 RNA polymerase sigma-70 factor strong 50 95
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04750 RNA polymerase sigma-70 factor insig. 49 96
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS02810 RNA polymerase sigma-70 factor insig. 47 94
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05780 RNA polymerase sigma-70 factor insig. 45 96
  Phocaeicola dorei CL03T12C01 ABI39_RS02605 RNA polymerase sigma-70 factor insig. 44 94
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS11490 RNA polymerase sigma-70 factor insig. 44 100
  Bacteroides stercoris CC31F HMPREF1181_RS00820 RNA polymerase sigma-70 factor insig. 37 98
  Phocaeicola dorei CL03T12C01 ABI39_RS10845 RNA polymerase sigma-70 factor insig. 40 91
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS15055 RNA polymerase sigma-70 factor sig. 39 91
  Phocaeicola dorei CL03T12C01 ABI39_RS08670 RNA polymerase sigma-70 factor cofit 39 97
  Bacteroides thetaiotaomicron VPI-5482 BT3748 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 39 94
  Bacteroides thetaiotaomicron VPI-5482 BT2463 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 39 94
  Bacteroides thetaiotaomicron VPI-5482 BT2198 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 33 94
  Bacteroides thetaiotaomicron VPI-5482 BT2562 putative RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 40 73
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS15190 RNA polymerase sigma-70 factor cofit 35 96
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS03570 RNA polymerase sigma-70 factor insig. 37 86
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04080 RNA polymerase sigma-70 factor insig. 32 100
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05010 RNA polymerase sigma-70 factor insig. 31 97
  Bacteroides ovatus ATCC 8483 BACOVA_02944 RNA polymerase sigma-70 factor insig. 34 89
  Bacteroides ovatus ATCC 8483 BACOVA_04866 RNA polymerase sigma-70 factor insig. 31 89
  Bacteroides ovatus ATCC 8483 BACOVA_01977 RNA polymerase sigma-70 factor insig. 31 95
  Bacteroides thetaiotaomicron VPI-5482 BT4070 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 31 88
  Bacteroides thetaiotaomicron VPI-5482 BT1877 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 35 85
  Bacteroides stercoris CC31F HMPREF1181_RS01060 RNA polymerase sigma-70 factor insig. 32 92
  Phocaeicola dorei CL03T12C01 ABI39_RS00860 RNA polymerase sigma-70 factor insig. 30 95
  Bacteroides ovatus ATCC 8483 BACOVA_01251 RNA polymerase sigma-70 factor sig. 32 95
  Bacteroides ovatus ATCC 8483 BACOVA_03594 RNA polymerase sigma-70 factor insig. 32 95
  Phocaeicola dorei CL03T12C01 ABI39_RS01635 RNA polymerase sigma-70 factor insig. 31 100
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS02390 RNA polymerase sigma-70 factor insig. 33 96
  Bacteroides thetaiotaomicron VPI-5482 BT4355 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 31 91
  Bacteroides ovatus ATCC 8483 BACOVA_02951 RNA polymerase sigma-70 factor insig. 37 84
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3656 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 31 86
  Bacteroides thetaiotaomicron VPI-5482 BT3010 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 31 95
  Bacteroides thetaiotaomicron VPI-5482 BT0188 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 30 94
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS13360 RNA polymerase sigma-70 factor insig. 29 99
  Bacteroides stercoris CC31F HMPREF1181_RS04900 RNA polymerase sigma-70 factor insig. 31 93
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS13420 RNA polymerase sigma-70 factor insig. 28 98
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3527 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 32 91
  Phocaeicola dorei CL03T12C01 ABI39_RS08655 RNA polymerase sigma-70 factor insig. 28 100
  Bacteroides ovatus ATCC 8483 BACOVA_05174 RNA polymerase sigma-70 factor insig. 30 93
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS10785 RNA polymerase sigma-70 factor insig. 30 92
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS00770 RNA polymerase sigma-70 factor insig. 31 97
  Phocaeicola dorei CL03T12C01 ABI39_RS06310 RNA polymerase sigma-70 factor cofit 30 92
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS06675 RNA polymerase sigma-70 factor insig. 33 94
  Phocaeicola dorei CL03T12C01 ABI39_RS18115 RNA polymerase sigma-70 factor insig. 28 95
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS00265 RNA polymerase sigma-70 factor insig. 30 93
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05735 RNA polymerase sigma-70 factor insig. 29 96
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2168 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 32 89
  Bacteroides ovatus ATCC 8483 BACOVA_02488 RNA polymerase sigma-70 factor insig. 32 96
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4327 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 31 87
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS15195 RNA polymerase sigma-70 factor insig. 31 93
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS06645 RNA polymerase sigma-70 factor insig. 29 100
  Bacteroides thetaiotaomicron VPI-5482 BT0752 putative RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 32 90
  Bacteroides ovatus ATCC 8483 BACOVA_05184 RNA polymerase sigma-70 factor insig. 27 96
  Bacteroides ovatus ATCC 8483 BACOVA_05457 RNA polymerase sigma-70 factor insig. 30 96
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS05630 RNA polymerase sigma-70 factor sig. 35 82
  Bacteroides stercoris CC31F HMPREF1181_RS10020 RNA polymerase sigma-70 factor cofit 30 94
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS18610 RNA polymerase sigma-70 factor insig. 27 95
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS00780 RNA polymerase sigma-70 factor insig. 30 86
  Bacteroides thetaiotaomicron VPI-5482 BT4643 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 28 92
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05690 RNA polymerase sigma-70 factor insig. 28 95
  Bacteroides thetaiotaomicron VPI-5482 BT1053 RNA polymerase ECF-type sigma factor (NCBI ptt file) no data 31 95
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04910 RNA polymerase sigma-70 factor insig. 30 89
  Bacteroides ovatus ATCC 8483 BACOVA_04092 RNA polymerase sigma-70 factor insig. 30 95
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS07030 RNA polymerase sigma-70 factor insig. 30 90
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05575 RNA polymerase sigma-70 factor insig. 28 94
  Phocaeicola dorei CL03T12C01 ABI39_RS10300 RNA polymerase sigma-70 factor sig. 32 84
  Bacteroides ovatus ATCC 8483 BACOVA_03283 RNA polymerase sigma-70 factor insig. 29 91
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4534 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 28 95
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3924 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 strong 30 89
  Bacteroides thetaiotaomicron VPI-5482 BT4705 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 27 90
  Phocaeicola dorei CL03T12C01 ABI39_RS02030 RNA polymerase sigma-70 factor insig. 27 91
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_11515 RNA polymerase sigma-70 factor insig. 27 91
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS17460 RNA polymerase sigma-70 factor insig. 25 95
  Phocaeicola dorei CL03T12C01 ABI39_RS05700 RNA polymerase sigma-70 factor insig. 30 97
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3125 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 27 98
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS02700 RNA polymerase sigma-70 factor insig. 28 99
  Phocaeicola dorei CL03T12C01 ABI39_RS00120 RNA polymerase sigma-70 factor insig. 29 91
  Bacteroides thetaiotaomicron VPI-5482 BT3037 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 27 90
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11705 hypothetical protein insig. 26 93
  Bacteroides thetaiotaomicron VPI-5482 BT4250 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 27 94
  Bacteroides ovatus ATCC 8483 BACOVA_05556 RNA polymerase sigma-70 factor insig. 25 91
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS13325 RNA polymerase sigma-70 factor insig. 29 82
  Bacteroides ovatus ATCC 8483 BACOVA_05151 RNA polymerase sigma-70 factor insig. 28 94
  Phocaeicola dorei CL03T12C01 ABI39_RS10155 RNA polymerase sigma-70 factor insig. 27 96
  Phocaeicola dorei CL03T12C01 ABI39_RS08620 RNA polymerase sigma-70 factor insig. 29 94
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4566 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 27 94
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS14710 hypothetical protein insig. 26 93
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1926 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 26 94
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS20645 RNA polymerase subunit sigma-70 insig. 27 93
  Pseudomonas fluorescens FW300-N2E3 AO353_04915 RNA polymerase subunit sigma-24 insig. 30 77
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS09605 RNA polymerase sigma-70 factor insig. 28 88
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4951 FIG006045: Sigma factor, ECF subfamily insig. 27 94
  Pseudomonas fluorescens SBW25 PFLU_RS05190 RNA polymerase sigma factor insig. 31 79
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05190 RNA polymerase sigma factor insig. 31 79
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS06415 RNA polymerase sigma factor insig. 24 94
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS02575 hypothetical protein insig. 31 83
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12435 hypothetical protein insig. 29 79
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS00590 RNA polymerase sigma-70 factor insig. 28 92