Conservation of cofitness between PP_4107 and PP_5096 in Pseudomonas putida KT2440

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4107 Transcriptional regulator, LysR family 1.0 PP_5096 putative factor involved in shape determination 0.25 9
Pseudomonas simiae WCS417 0.75 PS417_23350 LysR family transcriptional regulator 0.61 PS417_26735 membrane protein — —
Pseudomonas fluorescens SBW25 0.75 PFLU_RS25165 LysR family transcriptional regulator 0.59 PFLU_RS28380 YggT family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.75 PFLU_RS25165 LysR family transcriptional regulator 0.59 PFLU_RS28380 YggT family protein low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_0596 transcriptional regulator, LysR family 0.67 Psyr_0475 Protein of unknown function YGGT low > 86
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_0596 transcriptional regulator, LysR family 0.67 Psyr_0475 Protein of unknown function YGGT low > 86
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_128 Transcriptional regulator, LysR family 0.62 PfGW456L13_1009 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) low > 87
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS05805 LysR family transcriptional regulator 0.20 RR42_RS36110 membrane protein low > 128
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.32 GFF4865 Glycine cleavage system transcriptional activator GcvA 0.28 GFF3055 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) low > 78
Escherichia coli ECOR27 0.32 NOLOHH_12000 gcvA glycine cleavage system transcriptional regulator GcvA 0.28 NOLOHH_11120 yggT osmotic shock tolerance protein YggT — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_00923 Glycine cleavage system transcriptional activator 0.28 OHPLBJKB_00764 hypothetical protein low > 73
Escherichia coli BL21 0.32 ECD_02659 glycine cleavage system transcriptional activator; autorepressor 0.28 ECD_02782 putative inner membrane protein; compensates for loss in K+ uptake — —
Escherichia coli ECOR38 0.32 HEPCGN_19375 gcvA glycine cleavage system transcriptional regulator GcvA 0.28 HEPCGN_18555 yggT osmotic shock tolerance protein YggT low > 85
Escherichia coli Nissle 1917 0.32 ECOLIN_RS15650 glycine cleavage system transcriptional regulator GcvA 0.28 ECOLIN_RS16420 osmotic shock tolerance protein YggT — —
Escherichia coli BW25113 0.32 b2808 gcvA DNA-binding transcriptional dual regulator (NCBI) 0.28 b2952 yggT predicted inner membrane protein (NCBI) low > 76
Escherichia coli ECRC102 0.32 NIAGMN_17890 gcvA glycine cleavage system transcriptional regulator GcvA 0.28 NIAGMN_17015 yggT osmotic shock tolerance protein YggT — —
Escherichia coli ECRC101 0.32 OKFHMN_20120 gcvA glycine cleavage system transcriptional regulator GcvA 0.28 OKFHMN_19250 yggT osmotic shock tolerance protein YggT — —
Escherichia fergusonii Becca 0.32 EFB2_01109 Glycine cleavage system transcriptional activator 0.28 EFB2_00950 hypothetical protein low > 86
Serratia liquefaciens MT49 0.32 IAI46_20340 transcriptional regulator GcvA 0.28 IAI46_21420 YggT family protein low > 86
Escherichia coli ECRC99 0.32 KEDOAH_08010 gcvA glycine cleavage system transcriptional regulator GcvA 0.28 KEDOAH_08890 yggT osmotic shock tolerance protein YggT — —
Escherichia coli ECRC62 0.32 BNILDI_10505 gcvA glycine cleavage system transcriptional regulator GcvA 0.28 BNILDI_09700 yggT osmotic shock tolerance protein YggT — —
Escherichia coli ECRC101 0.32 MCAODC_10645 gcvA glycine cleavage system transcriptional regulator GcvA 0.28 MCAODC_09770 yggT osmotic shock tolerance protein YggT — —
Escherichia coli ECRC98 0.32 JDDGAC_23785 gcvA glycine cleavage system transcriptional regulator GcvA 0.28 JDDGAC_22880 yggT osmotic shock tolerance protein YggT — —
Klebsiella michiganensis M5al 0.32 BWI76_RS22955 transcriptional regulator GcvA 0.29 BWI76_RS24105 resistance protein low > 92
Enterobacter asburiae PDN3 0.31 EX28DRAFT_2883 Transcriptional regulator 0.28 EX28DRAFT_2990 Predicted integral membrane protein low > 76
Dickeya dadantii 3937 0.31 DDA3937_RS05050 transcriptional regulator GcvA 0.27 DDA3937_RS17310 YggT family protein low > 74
Dickeya dianthicola 67-19 0.31 HGI48_RS05050 transcriptional regulator GcvA 0.27 HGI48_RS17355 YggT family protein low > 71
Dickeya dianthicola ME23 0.31 DZA65_RS05390 transcriptional regulator GcvA 0.27 DZA65_RS18445 YggT family protein low > 75
Rahnella sp. WP5 0.31 EX31_RS13110 transcriptional regulator GcvA 0.29 EX31_RS02695 YggT family protein low > 89

Not shown: 4 genomes with orthologs for PP_4107 only; 34 genomes with orthologs for PP_5096 only