| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_2356 | | putative Phytochrome family protein | 1.0 | PP_4655 | | protocatechuate 3,4-dioxygenase alpha chain | 0.40 | 11 |
| Burkholderia phytofirmans PsJN | 0.43 | BPHYT_RS06325 | | ATPase | 0.34 | BPHYT_RS33460 | | protocatechuate 3,4-dioxygenase subunit alpha | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.42 | QEN71_RS10565 | | ATP-binding protein | 0.34 | QEN71_RS14835 | | protocatechuate 3,4-dioxygenase subunit alpha | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.42 | H281DRAFT_01748 | | Bacteriophytochrome (light-regulated signal transduction histidine kinase) | 0.35 | H281DRAFT_03864 | | protocatechuate 3,4-dioxygenase, alpha subunit | low | > 103 |
| Azospirillum sp. SherDot2 | 0.41 | MPMX19_04272 | | Phytochrome-like protein cph1 | 0.38 | MPMX19_05864 | | Protocatechuate 3,4-dioxygenase alpha chain | low | > 112 |
| Ralstonia sp. UNC404CL21Col | 0.41 | ABZR87_RS02225 | | ATP-binding protein | 0.47 | ABZR87_RS12090 | | protocatechuate 3,4-dioxygenase subunit alpha | low | > 80 |
| Variovorax sp. SCN45 | 0.39 | GFF651 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | 0.33 | GFF2189 | | Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) | low | > 127 |
| Agrobacterium fabrum C58 | 0.39 | Atu1990 | | bacteriophytochrome protein | 0.39 | Atu4539 | | protocatechuate 3,4-dioxygenase alpha chain | low | > 89 |
| Pseudomonas fluorescens SBW25 | 0.25 | PFLU_RS25130 | | GAF domain-containing protein | 0.27 | PFLU_RS06745 | | protocatechuate 3,4-dioxygenase subunit alpha | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.25 | PFLU_RS25130 | | GAF domain-containing protein | 0.27 | PFLU_RS06745 | | protocatechuate 3,4-dioxygenase subunit alpha | low | > 109 |
| Pseudomonas simiae WCS417 | 0.24 | PS417_23325 | | histidine kinase | 0.28 | PS417_06720 | | protocatechuate 3,4-dioxygenase | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.23 | AO356_09865 | | histidine kinase | 0.29 | AO356_04920 | | protocatechuate 3,4-dioxygenase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.23 | Pf6N2E2_3852 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | 0.29 | Pf6N2E2_2833 | | Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) | low | > 103 |
| Pseudomonas sp. RS175 | 0.23 | PFR28_04918 | | Phytochrome-like protein cph1 | 0.28 | PFR28_00624 | | Protocatechuate 3,4-dioxygenase alpha chain | low | > 88 |
Not shown: 9 genomes with orthologs for PP_2356 only; 22 genomes with orthologs for PP_4655 only