Conservation of cofitness between PP_0119 and PP_0489 in Pseudomonas putida KT2440

26 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0119 putative zinc uptake regulation protein ZUR 1.0 PP_0489 formate dehydrogenase-O major subunit 0.21 18
Pseudomonas stutzeri RCH2 0.79 Psest_4308 Fe2+/Zn2+ uptake regulation proteins 0.79 Psest_4104 formate dehydrogenase, alpha subunit, proteobacterial-type — —
Pseudomonas fluorescens GW456-L13 0.77 PfGW456L13_598 Zinc uptake regulation protein ZUR 0.89 PfGW456L13_3091 Formate dehydrogenase O alpha subunit (EC 1.2.1.2) @ selenocysteine-containing low > 87
Pseudomonas fluorescens FW300-N1B4 0.73 Pf1N1B4_1871 Zinc uptake regulation protein ZUR 0.89 Pf1N1B4_4947 Formate dehydrogenase O alpha subunit (EC 1.2.1.2) @ selenocysteine-containing low > 87
Azospirillum sp. SherDot2 0.55 MPMX19_01585 Zinc uptake regulation protein 0.63 MPMX19_03497 Formate dehydrogenase-O major subunit low > 112
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS02580 Fur family transcriptional regulator 0.72 QEN71_RS18415 formate dehydrogenase-N subunit alpha low > 153
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS07900 transcriptional repressor 0.63 ABZR86_RS04505 formate dehydrogenase-N subunit alpha low > 74
Dickeya dadantii 3937 0.33 DDA3937_RS02765 zinc uptake transcriptional repressor Zur 0.62 DDA3937_RS14175 formate dehydrogenase-N subunit alpha 0.65 25
Pectobacterium carotovorum WPP14 0.33 HER17_RS18780 zinc uptake transcriptional repressor Zur 0.62 HER17_RS14665 formate dehydrogenase-N subunit alpha low > 75
Dickeya dianthicola ME23 0.32 DZA65_RS02895 zinc uptake transcriptional repressor Zur 0.62 DZA65_RS14830 formate dehydrogenase-N subunit alpha low > 75
Dickeya dianthicola 67-19 0.32 HGI48_RS02740 zinc uptake transcriptional repressor Zur 0.62 HGI48_RS07615 formate dehydrogenase-N subunit alpha low > 71
Serratia liquefaciens MT49 0.31 IAI46_22990 zinc uptake transcriptional repressor Zur 0.66 IAI46_00210 formate dehydrogenase-N subunit alpha low > 86
Rahnella sp. WP5 0.30 EX31_RS11860 zinc uptake transcriptional repressor Zur 0.62 EX31_RS05775 formate dehydrogenase-N subunit alpha low > 89
Enterobacter asburiae PDN3 0.29 EX28DRAFT_4266 Fe2+/Zn2+ uptake regulation proteins 0.66 EX28DRAFT_4377 formate dehydrogenase (quinone-dependent) catalytic subunit low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF1416 Zinc uptake regulation protein ZUR 0.66 GFF2253 Formate dehydrogenase O alpha subunit (EC 1.2.1.2) @ selenocysteine-containing low > 78
Escherichia coli ECRC102 0.28 NIAGMN_10800 zur zinc uptake transcriptional repressor Zur 0.67 NIAGMN_11710 fdnG formate dehydrogenase-N subunit alpha — —
Escherichia coli ECRC99 0.28 KEDOAH_15110 zur zinc uptake transcriptional repressor Zur 0.67 KEDOAH_14200 fdnG formate dehydrogenase-N subunit alpha — —
Escherichia coli ECRC98 0.28 JDDGAC_16675 zur zinc uptake transcriptional repressor Zur 0.67 JDDGAC_17580 fdnG formate dehydrogenase-N subunit alpha — —
Escherichia coli ECRC101 0.28 MCAODC_03550 zur zinc uptake transcriptional repressor Zur 0.67 MCAODC_04455 fdnG formate dehydrogenase-N subunit alpha — —
Escherichia coli ECRC101 0.28 OKFHMN_13050 zur zinc uptake transcriptional repressor Zur 0.67 OKFHMN_13955 fdnG formate dehydrogenase-N subunit alpha — —
Klebsiella michiganensis M5al 0.28 BWI76_RS01890 transcriptional regulator Zur 0.62 BWI76_RS19155 formate dehydrogenase-N subunit alpha low > 92
Escherichia coli BW25113 0.28 b4046 yjbK putative regulator (VIMSS) 0.67 b3894 fdoG formate dehydrogenase-O, large subunit (NCBI) low > 76
Escherichia coli BL21 0.28 ECD_03918 transcriptional repressor, Zn(II)-binding 0.67 ECD_03779 formate dehydrogenase-O, large subunit low > 60
Escherichia coli ECOR38 0.28 HEPCGN_11570 zur zinc uptake transcriptional repressor Zur 0.67 HEPCGN_12590 fdnG formate dehydrogenase-N subunit alpha low > 85
Escherichia coli ECOR27 0.28 NOLOHH_05205 zur zinc uptake transcriptional repressor Zur 0.67 NOLOHH_06075 fdnG formate dehydrogenase-N subunit alpha low > 57
Escherichia coli ECRC62 0.28 BNILDI_06315 zur zinc uptake transcriptional repressor Zur 0.67 BNILDI_05450 fdnG formate dehydrogenase-N subunit alpha — —
Escherichia coli Nissle 1917 0.27 ECOLIN_RS23350 zinc uptake transcriptional repressor Zur 0.67 ECOLIN_RS22450 formate dehydrogenase-N subunit alpha low > 52

Not shown: 37 genomes with orthologs for PP_0119 only; 8 genomes with orthologs for PP_0489 only