Conservation of cofitness between HER17_RS12475 and HER17_RS01530 in Pectobacterium carotovorum WPP14

25 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS12475 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 1.0 HER17_RS01530 DeoR/GlpR family transcriptional regulator 0.67 16
Dickeya dianthicola 67-19 0.79 HGI48_RS09505 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.96 HGI48_RS19800 DeoR/GlpR family transcriptional regulator low > 71
Dickeya dadantii 3937 0.79 DDA3937_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.97 DDA3937_RS19670 DeoR/GlpR family transcriptional regulator low > 74
Dickeya dianthicola ME23 0.78 DZA65_RS09815 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.96 DZA65_RS20890 DeoR/GlpR family transcriptional regulator — —
Serratia liquefaciens MT49 0.78 IAI46_08395 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.93 IAI46_23910 DeoR/GlpR family transcriptional regulator low > 86
Rahnella sp. WP5 0.75 EX31_RS09605 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.89 EX31_RS04995 DeoR/GlpR family transcriptional regulator low > 89
Pantoea sp. MT58 0.74 IAI47_13020 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.87 IAI47_01765 DeoR/GlpR family transcriptional regulator low > 76
Escherichia coli ECRC62 0.73 BNILDI_20560 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 BNILDI_02780 glpR DeoR/GlpR family transcriptional regulator low > 75
Escherichia coli BL21 0.73 ECD_00864 23S rRNA m(5)U747 methyltransferase, SAM-dependent 0.80 ECD_03274 DNA-binding transcriptional repressor low > 61
Enterobacter sp. TBS_079 0.73 MPMX20_01500 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 MPMX20_04306 Glycerol-3-phosphate regulon repressor low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_02809 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 OHPLBJKB_00281 Glycerol-3-phosphate regulon repressor low > 73
Escherichia coli ECRC102 0.73 NIAGMN_03980 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 NIAGMN_14710 glpR DeoR/GlpR family transcriptional regulator — —
Escherichia coli ECRC99 0.73 KEDOAH_21975 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 KEDOAH_11200 glpR DeoR/GlpR family transcriptional regulator — —
Escherichia coli ECOR38 0.73 HEPCGN_02095 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 HEPCGN_15760 glpR DeoR/GlpR family transcriptional regulator low > 87
Escherichia coli ECRC100 0.73 OKFHMN_05935 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 OKFHMN_16940 glpR DeoR/GlpR family transcriptional regulator low > 80
Escherichia fergusonii Becca 0.73 EFB2_03202 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 EFB2_00406 Glycerol-3-phosphate regulon repressor low > 86
Escherichia coli Nissle 1917 0.73 ECOLIN_RS04575 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 ECOLIN_RS19540 DeoR/GlpR family transcriptional regulator — —
Escherichia coli ECRC101 0.73 MCAODC_25150 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 MCAODC_07470 glpR DeoR/GlpR family transcriptional regulator low > 87
Enterobacter asburiae PDN3 0.72 EX28DRAFT_2094 23S rRNA (uracil-5-)-methyltransferase RumB 0.80 EX28DRAFT_4123 transcriptional regulator, DeoR family low > 76
Escherichia coli ECRC98 0.72 JDDGAC_09570 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 JDDGAC_20570 glpR DeoR/GlpR family transcriptional regulator low > 86
Escherichia coli ECOR27 0.72 NOLOHH_22305 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.80 NOLOHH_08735 glpR DeoR/GlpR family transcriptional regulator low > 75
Escherichia coli BW25113 0.72 b0859 rumB 23S rRNA m(5)U747-methyltransferase (NCBI) 0.80 b3423 glpR DNA-binding transcriptional repressor (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF763 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) 0.80 GFF590 Glycerol-3-phosphate regulon repressor, DeoR family low > 78
Klebsiella michiganensis M5al 0.70 BWI76_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase 0.80 BWI76_RS26175 DeoR/GlpR family transcriptional regulator low > 92
Erwinia tracheiphila SCR3 0.65 LU632_RS09660 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.86 LU632_RS23005 DeoR/GlpR family transcriptional regulator low > 74
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_18780 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.67 CSW01_18830 DeoR/GlpR family transcriptional regulator low > 62

Not shown: 4 genomes with orthologs for HER17_RS12475 only; 49 genomes with orthologs for HER17_RS01530 only