Conservation of cofitness between PS417_01280 and PS417_19130 in Pseudomonas simiae WCS417

24 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_01280 peptidoglycan-binding protein LysM 1.0 PS417_19130 L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) (from data) 0.17 13
Pseudomonas fluorescens SBW25 0.88 PFLU_RS01375 peptidoglycan-binding protein LysM 0.98 PFLU_RS21125 FMN-dependent L-lactate dehydrogenase LldD low > 109
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS01375 peptidoglycan-binding protein LysM 0.98 PFLU_RS21125 FMN-dependent L-lactate dehydrogenase LldD low > 109
Pseudomonas putida KT2440 0.82 PP_0258 regulator of murein cross-linking 0.75 PP_4736 L-lactate dehydrogenase low > 96
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_4943 Peptidoglycan-binding LysM:Transport-associated 0.88 Psyr_0908 FMN-dependent alpha-hydroxy acid dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_4943 Peptidoglycan-binding LysM:Transport-associated 0.88 Psyr_0908 FMN-dependent alpha-hydroxy acid dehydrogenase low > 86
Pantoea sp. MT58 0.60 IAI47_14780 peptidoglycan-binding protein LysM 0.78 IAI47_15020 FMN-dependent L-lactate dehydrogenase LldD low > 76
Serratia liquefaciens MT49 0.57 IAI46_14930 peptidoglycan-binding protein LysM 0.78 IAI46_20620 FMN-dependent L-lactate dehydrogenase LldD low > 86
Escherichia coli ECOR38 0.55 HEPCGN_20170 kbp potassium binding protein Kbp 0.77 HEPCGN_14610 lldD quinone-dependent L-lactate dehydrogenase low > 85
Escherichia coli ECRC62 0.55 BNILDI_11280 kbp potassium binding protein Kbp 0.77 BNILDI_03865 lldD quinone-dependent L-lactate dehydrogenase — —
Escherichia coli ECRC99 0.55 KEDOAH_07245 kbp potassium binding protein Kbp 0.77 KEDOAH_12380 lldD quinone-dependent L-lactate dehydrogenase — —
Escherichia coli ECRC98 0.55 JDDGAC_24555 kbp potassium binding protein Kbp 0.77 JDDGAC_19395 lldD quinone-dependent L-lactate dehydrogenase — —
Escherichia coli ECRC101 0.55 MCAODC_11415 kbp potassium binding protein Kbp 0.77 MCAODC_06280 lldD quinone-dependent L-lactate dehydrogenase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF1570 FIG00638941: hypothetical protein 0.76 GFF409 L-lactate dehydrogenase (EC 1.1.2.3) — —
Escherichia coli ECRC101 0.55 OKFHMN_20895 kbp potassium binding protein Kbp 0.77 OKFHMN_15770 lldD quinone-dependent L-lactate dehydrogenase — —
Escherichia coli ECOR27 0.55 NOLOHH_12720 kbp potassium binding protein Kbp 0.77 NOLOHH_07650 lldD quinone-dependent L-lactate dehydrogenase low > 57
Escherichia coli ECRC102 0.55 NIAGMN_18660 kbp potassium binding protein Kbp 0.77 NIAGMN_13530 lldD quinone-dependent L-lactate dehydrogenase — —
Escherichia coli BL21 0.55 ECD_02521 uncharacterized protein 0.77 ECD_03463 L-lactate dehydrogenase, FMN-linked low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_01067 putative protein YgaU 0.77 OHPLBJKB_00094 L-lactate dehydrogenase low > 73
Escherichia coli BW25113 0.54 b2665 ygaU hypothetical protein (NCBI) 0.77 b3605 lldD L-lactate dehydrogenase, FMN-linked (NCBI) low > 76
Escherichia coli Nissle 1917 0.54 ECOLIN_RS14860 potassium binding protein Kbp 0.77 ECOLIN_RS20580 quinone-dependent L-lactate dehydrogenase — —
Escherichia fergusonii Becca 0.54 EFB2_01265 Potassium binding protein Kbp 0.77 EFB2_00205 L-lactate dehydrogenase low > 86
Enterobacter asburiae PDN3 0.54 EX28DRAFT_3061 BON domain/LysM domain 0.76 EX28DRAFT_3855 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases low > 76
Enterobacter sp. TBS_079 0.51 MPMX20_01149 Potassium binding protein Kbp 0.76 MPMX20_00129 L-lactate dehydrogenase low > 85
Azospirillum brasilense Sp245 0.45 AZOBR_RS15745 hypothetical protein 0.31 AZOBR_RS27055 L-lactate dehydrogenase low > 97

Not shown: 17 genomes with orthologs for PS417_01280 only; 12 genomes with orthologs for PS417_19130 only