Conservation of cofitness between ECD_03243 and ECD_02661 in Escherichia coli BL21

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03243 DNA catabolic putative fimbrial transporter 1.0 ECD_02661 cysteine sulfinate desulfinase 0.79 3
Escherichia coli BW25113 1.00 b3391 hofQ predicted fimbrial transporter (NCBI) 1.00 b2810 csdA cysteine sulfinate desulfinase (NCBI) low > 76
Escherichia coli Nissle 1917 0.98 ECOLIN_RS19370 DNA uptake porin HofQ 0.98 ECOLIN_RS15660 cysteine desulfurase CsdA low > 55
Escherichia coli ECOR27 0.98 NOLOHH_08895 hofQ DNA uptake porin HofQ 0.99 NOLOHH_11985 csdA cysteine desulfurase CsdA low > 75
Escherichia coli ECRC62 0.97 BNILDI_02625 hofQ DNA uptake porin HofQ 1.00 BNILDI_10490 csdA cysteine desulfurase CsdA low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.97 OHPLBJKB_00312 Type IV pilus biogenesis and competence protein PilQ 1.00 OHPLBJKB_00921 Cysteine desulfurase CsdA low > 73
Escherichia coli ECRC102 0.97 NIAGMN_14875 hofQ DNA uptake porin HofQ 0.99 NIAGMN_17875 csdA cysteine desulfurase CsdA — —
Escherichia coli ECRC101 0.97 MCAODC_07635 hofQ DNA uptake porin HofQ 0.99 MCAODC_10630 csdA cysteine desulfurase CsdA low > 87
Escherichia coli ECRC98 0.97 JDDGAC_20735 hofQ DNA uptake porin HofQ 0.99 JDDGAC_23770 csdA cysteine desulfurase CsdA low > 86
Escherichia coli ECRC99 0.97 KEDOAH_11035 hofQ DNA uptake porin HofQ 0.99 KEDOAH_08025 csdA cysteine desulfurase CsdA — —
Escherichia coli ECRC100 0.97 OKFHMN_17105 hofQ DNA uptake porin HofQ 0.99 OKFHMN_20105 csdA cysteine desulfurase CsdA low > 80
Escherichia coli ECOR38 0.96 HEPCGN_15925 hofQ DNA uptake porin HofQ 0.99 HEPCGN_19360 csdA cysteine desulfurase CsdA 0.43 26
Escherichia fergusonii Becca 0.95 EFB2_00437 Type IV pilus biogenesis and competence protein PilQ 0.98 EFB2_01107 Cysteine desulfurase CsdA low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.81 GFF628 Type IV pilus biogenesis protein PilQ 0.87 GFF4867 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA low > 78
Enterobacter asburiae PDN3 0.73 EX28DRAFT_4151 type IV pilus secretin (or competence protein) PilQ 0.86 EX28DRAFT_2886 cysteine desulfurase, catalytic subunit CsdA low > 76
Enterobacter sp. TBS_079 0.72 MPMX20_04280 Type IV pilus biogenesis and competence protein PilQ 0.85 MPMX20_03673 Cysteine desulfurase CsdA low > 85
Klebsiella michiganensis M5al 0.67 BWI76_RS26100 DNA transporter HofQ 0.82 BWI76_RS22965 cysteine sulfinate desulfinase low > 92
Pectobacterium carotovorum WPP14 0.49 HER17_RS01770 DNA uptake porin HofQ 0.70 HER17_RS16425 cysteine desulfurase CsdA low > 75
Pantoea sp. MT58 0.49 IAI47_01885 DNA uptake porin HofQ 0.73 IAI47_04015 cysteine desulfurase CsdA low > 76
Erwinia tracheiphila SCR3 0.49 LU632_RS22875 hofQ DNA uptake porin HofQ 0.69 LU632_RS06240 csdA cysteine desulfurase CsdA low > 74
Dickeya dianthicola ME23 0.48 DZA65_RS20770 DNA uptake porin HofQ 0.65 DZA65_RS05385 cysteine desulfurase CsdA low > 75
Dickeya dianthicola 67-19 0.48 HGI48_RS19685 DNA uptake porin HofQ 0.66 HGI48_RS05045 cysteine desulfurase CsdA low > 71
Dickeya dadantii 3937 0.48 DDA3937_RS19555 DNA uptake porin HofQ 0.66 DDA3937_RS05040 cysteine desulfurase CsdA low > 74
Rahnella sp. WP5 0.47 EX31_RS04730 DNA uptake porin HofQ 0.67 EX31_RS13120 cysteine desulfurase CsdA low > 89
Serratia liquefaciens MT49 0.46 IAI46_23715 DNA uptake porin HofQ 0.71 IAI46_20350 cysteine desulfurase CsdA low > 86
Pseudomonas putida KT2440 0.27 PP_5080 type 4 pili biogenesis protein 0.39 PP_1529 Probable cysteine desulfurase low > 96
Pseudomonas fluorescens SBW25-INTG 0.25 PFLU_RS02020 type IV pilus secretin PilQ family protein 0.38 PFLU_RS06240 cysteine desulfurase low > 109
Pseudomonas fluorescens SBW25 0.25 PFLU_RS02020 type IV pilus secretin PilQ family protein 0.38 PFLU_RS06240 cysteine desulfurase low > 109
Pseudomonas simiae WCS417 0.24 PS417_01975 pilus assembly protein PilQ 0.37 PS417_06175 cysteine sulfinate desulfinase low > 88

Not shown: 1 genomes with orthologs for ECD_03243 only; 9 genomes with orthologs for ECD_02661 only