Conservation of cofitness between ECD_03243 and ECD_02637 in Escherichia coli BL21

27 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03243 DNA catabolic putative fimbrial transporter 1.0 ECD_02637 DUF446 family protein 0.67 14
Escherichia coli BW25113 1.00 b3391 hofQ predicted fimbrial transporter (NCBI) 0.99 b2792 yqcC hypothetical protein (NCBI) low > 76
Escherichia coli Nissle 1917 0.98 ECOLIN_RS19370 DNA uptake porin HofQ 0.89 ECOLIN_RS15555 YqcC family protein low > 55
Escherichia coli ECOR27 0.98 NOLOHH_08895 hofQ DNA uptake porin HofQ 0.99 NOLOHH_12085 yqcC Uncharacterized protein YqcC low > 75
Escherichia coli ECRC62 0.97 BNILDI_02625 hofQ DNA uptake porin HofQ 0.99 BNILDI_10590 yqcC Uncharacterized protein YqcC low > 75
Escherichia coli ECRC98 0.97 JDDGAC_20735 hofQ DNA uptake porin HofQ 0.90 JDDGAC_23870 tRNA pseudouridine synthase C low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.97 OHPLBJKB_00312 Type IV pilus biogenesis and competence protein PilQ 1.00 OHPLBJKB_00939 putative protein YqcC low > 73
Escherichia coli ECRC102 0.97 NIAGMN_14875 hofQ DNA uptake porin HofQ 0.90 NIAGMN_17975 tRNA pseudouridine synthase C — —
Escherichia coli ECRC100 0.97 OKFHMN_17105 hofQ DNA uptake porin HofQ 0.90 OKFHMN_20205 tRNA pseudouridine synthase C low > 80
Escherichia coli ECRC99 0.97 KEDOAH_11035 hofQ DNA uptake porin HofQ 0.90 KEDOAH_07925 tRNA pseudouridine synthase C — —
Escherichia coli ECRC101 0.97 MCAODC_07635 hofQ DNA uptake porin HofQ 0.90 MCAODC_10730 tRNA pseudouridine synthase C low > 87
Escherichia coli ECOR38 0.96 HEPCGN_15925 hofQ DNA uptake porin HofQ 0.90 HEPCGN_19460 tRNA pseudouridine synthase C low > 87
Escherichia fergusonii Becca 0.95 EFB2_00437 Type IV pilus biogenesis and competence protein PilQ 0.87 EFB2_01125 putative protein YqcC low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.81 GFF628 Type IV pilus biogenesis protein PilQ 0.81 GFF4847 Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C) low > 78
Enterobacter asburiae PDN3 0.73 EX28DRAFT_4151 type IV pilus secretin (or competence protein) PilQ 0.66 EX28DRAFT_2873 Uncharacterized protein conserved in bacteria low > 76
Enterobacter sp. TBS_079 0.72 MPMX20_04280 Type IV pilus biogenesis and competence protein PilQ 0.66 MPMX20_03662 putative protein YqcC low > 85
Klebsiella michiganensis M5al 0.67 BWI76_RS26100 DNA transporter HofQ 0.51 BWI76_RS22855 hypothetical protein low > 92
Pectobacterium carotovorum WPP14 0.49 HER17_RS01770 DNA uptake porin HofQ 0.43 HER17_RS16370 YqcC family protein low > 75
Pantoea sp. MT58 0.49 IAI47_01885 DNA uptake porin HofQ 0.48 IAI47_04060 YqcC family protein low > 76
Erwinia tracheiphila SCR3 0.49 LU632_RS22875 hofQ DNA uptake porin HofQ 0.45 LU632_RS06290 YqcC family protein low > 74
Dickeya dianthicola 67-19 0.48 HGI48_RS19685 DNA uptake porin HofQ 0.41 HGI48_RS05080 YqcC family protein low > 71
Dickeya dianthicola ME23 0.48 DZA65_RS20770 DNA uptake porin HofQ 0.41 DZA65_RS05420 YqcC family protein low > 75
Dickeya dadantii 3937 0.48 DDA3937_RS19555 DNA uptake porin HofQ 0.39 DDA3937_RS05080 YqcC family protein low > 74
Rahnella sp. WP5 0.47 EX31_RS04730 DNA uptake porin HofQ 0.36 EX31_RS13070 YqcC family protein low > 89
Serratia liquefaciens MT49 0.46 IAI46_23715 DNA uptake porin HofQ 0.42 IAI46_20305 YqcC family protein low > 86
Pseudomonas fluorescens SBW25-INTG 0.25 PFLU_RS02020 type IV pilus secretin PilQ family protein 0.26 PFLU_RS25655 YqcC family protein low > 109
Pseudomonas fluorescens SBW25 0.25 PFLU_RS02020 type IV pilus secretin PilQ family protein 0.26 PFLU_RS25655 YqcC family protein low > 109
Pseudomonas simiae WCS417 0.24 PS417_01975 pilus assembly protein PilQ 0.27 PS417_23815 pseudouridine synthase low > 88

Not shown: 2 genomes with orthologs for ECD_03243 only; 9 genomes with orthologs for ECD_02637 only