Conservation of cofitness between ECD_02776 and ECD_01263 in Escherichia coli BL21

25 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02776 16S rRNA m(3)U1498 methyltransferase, SAM-dependent 1.0 ECD_01263 ribonuclease II 0.74 11
Escherichia coli ECOR38 1.00 HEPCGN_18585 Ribosomal RNA small subunit methyltransferase E 0.99 HEPCGN_25680 rnb exoribonuclease II low > 87
Escherichia coli ECOR27 1.00 NOLOHH_11150 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.99 NOLOHH_20185 rnb exoribonuclease II low > 75
Escherichia coli Nissle 1917 1.00 ECOLIN_RS16390 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.99 ECOLIN_RS07765 exoribonuclease II — —
Escherichia coli ECRC100 1.00 OKFHMN_19280 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.99 OKFHMN_02520 rnb exoribonuclease II low > 80
Escherichia fergusonii Becca 1.00 EFB2_00956 Ribosomal RNA small subunit methyltransferase E 0.99 EFB2_02638 Exoribonuclease 2 low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00772 Ribosomal RNA small subunit methyltransferase E 1.00 OHPLBJKB_02395 Exoribonuclease 2 low > 73
Escherichia coli ECRC101 1.00 MCAODC_09800 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.99 MCAODC_15750 rnb exoribonuclease II low > 87
Escherichia coli ECRC99 1.00 KEDOAH_08860 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.99 KEDOAH_26245 rnb exoribonuclease II — —
Escherichia coli BW25113 1.00 b2946 yggJ orf, hypothetical protein (VIMSS) 0.99 b1286 rnb exoribonuclease II (NCBI) low > 76
Escherichia coli ECRC98 1.00 JDDGAC_22910 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.99 JDDGAC_05065 rnb exoribonuclease II low > 86
Escherichia coli ECRC102 1.00 NIAGMN_17045 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.99 NIAGMN_26690 rnb exoribonuclease II — —
Escherichia coli ECRC62 1.00 BNILDI_09730 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.99 BNILDI_18335 rnb exoribonuclease II low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF3048 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.90 GFF2698 Exoribonuclease II (EC 3.1.13.1) low > 78
Enterobacter asburiae PDN3 0.89 EX28DRAFT_2984 RNA methyltransferase, RsmE family 0.91 EX28DRAFT_0961 exoribonuclease II 0.63 10
Enterobacter sp. TBS_079 0.89 MPMX20_03804 Ribosomal RNA small subunit methyltransferase E 0.90 MPMX20_02487 Exoribonuclease 2 low > 85
Klebsiella michiganensis M5al 0.86 BWI76_RS24070 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.88 BWI76_RS11990 exoribonuclease II low > 92
Rahnella sp. WP5 0.85 EX31_RS02660 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.73 EX31_RS07155 exoribonuclease II low > 89
Serratia liquefaciens MT49 0.83 IAI46_21385 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.76 IAI46_13870 exoribonuclease II low > 86
Pantoea sp. MT58 0.82 IAI47_03620 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.81 IAI47_09320 exoribonuclease II low > 76
Dickeya dadantii 3937 0.81 DDA3937_RS18555 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.77 DDA3937_RS12490 exoribonuclease II low > 74
Dickeya dianthicola 67-19 0.79 HGI48_RS18490 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.77 HGI48_RS12545 exoribonuclease II low > 71
Dickeya dianthicola ME23 0.79 DZA65_RS19625 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.77 DZA65_RS12995 exoribonuclease II low > 75
Erwinia tracheiphila SCR3 0.79 LU632_RS05485 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.77 LU632_RS12255 exoribonuclease II — —
Pectobacterium carotovorum WPP14 0.78 HER17_RS02640 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.78 HER17_RS09430 exoribonuclease II low > 75
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_02495 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.53 CSW01_18190 exoribonuclease 2 low > 62

Not shown: 74 genomes with orthologs for ECD_02776 only; 0 genomes with orthologs for ECD_01263 only