Conservation of cofitness between ECD_00898 and ECD_00184 in Escherichia coli BL21

19 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00898 dimethyl sulfoxide reductase, anaerobic, subunit A 1.0 ECD_00184 lysine decarboxylase 2, constitutive 0.84 1
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02774 Dimethyl sulfoxide reductase DmsA 1.00 OHPLBJKB_03477 Constitutive lysine decarboxylase low > 73
Escherichia coli BW25113 1.00 b0894 dmsA anaerobic dimethyl sulfoxide reductase subunit A (VIMSS) 1.00 b0186 ldcC lysine decarboxylase 2, constitutive (NCBI) low > 76
Escherichia coli ECRC98 1.00 JDDGAC_09355 dmsA dimethylsulfoxide reductase subunit A 1.00 JDDGAC_13720 ldcC lysine decarboxylase LdcC — —
Escherichia coli ECRC101 1.00 OKFHMN_05545 dmsA dimethylsulfoxide reductase subunit A 1.00 OKFHMN_10125 ldcC lysine decarboxylase LdcC — —
Escherichia coli ECOR27 1.00 NOLOHH_22115 dmsA dimethylsulfoxide reductase subunit A 1.00 NOLOHH_02470 ldcC lysine decarboxylase LdcC low > 57
Escherichia coli ECRC101 1.00 MCAODC_24935 dmsA dimethylsulfoxide reductase subunit A 1.00 MCAODC_00640 ldcC lysine decarboxylase LdcC — —
Escherichia coli ECRC99 1.00 KEDOAH_22190 dmsA dimethylsulfoxide reductase subunit A 1.00 KEDOAH_18030 ldcC lysine decarboxylase LdcC — —
Escherichia coli ECRC102 1.00 NIAGMN_03265 dmsA dimethylsulfoxide reductase subunit A 1.00 NIAGMN_07975 ldcC lysine decarboxylase LdcC — —
Escherichia coli ECRC62 1.00 BNILDI_20370 dmsA dimethylsulfoxide reductase subunit A 1.00 BNILDI_09200 ldcC lysine decarboxylase LdcC — —
Escherichia coli ECOR38 1.00 HEPCGN_22965 dmsA dimethylsulfoxide reductase subunit A 0.99 HEPCGN_08080 ldcC lysine decarboxylase LdcC low > 85
Escherichia coli Nissle 1917 0.99 ECOLIN_RS04755 dimethylsulfoxide reductase subunit A 0.99 ECOLIN_RS01010 lysine decarboxylase LdcC low > 52
Escherichia fergusonii Becca 0.99 EFB2_03167 Dimethyl sulfoxide reductase DmsA 0.99 EFB2_03858 Constitutive lysine decarboxylase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF4898 Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) 0.92 GFF35 Lysine decarboxylase 2, constitutive (EC 4.1.1.18) low > 78
Enterobacter asburiae PDN3 0.89 EX28DRAFT_2038 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family 0.90 EX28DRAFT_3774 Arginine/lysine/ornithine decarboxylases low > 76
Enterobacter sp. TBS_079 0.89 MPMX20_01556 Dimethyl sulfoxide reductase DmsA 0.90 MPMX20_00870 Constitutive lysine decarboxylase low > 85
Klebsiella michiganensis M5al 0.89 BWI76_RS09680 dimethyl sulfoxide reductase subunit A 0.89 BWI76_RS05300 lysine decarboxylase LdcC low > 92
Rahnella sp. WP5 0.82 EX31_RS18500 dimethylsulfoxide reductase subunit A 0.81 EX31_RS12950 lysine decarboxylase LdcC low > 89
Herbaspirillum seropedicae SmR1 0.13 HSERO_RS19290 molybdopterin oxidoreductase 0.34 HSERO_RS17280 lysine decarboxylase — —
Sinorhizobium meliloti 1021 0.11 SMc00609 anaerobic dimethyl sulfoxide reductase subunit A 0.36 SMa0682 decarboxylase (lysine, ornithine, arginine) low > 103

Not shown: 17 genomes with orthologs for ECD_00898 only; 3 genomes with orthologs for ECD_00184 only