Conservation of cofitness between ECD_01084 and ECD_00071 in Escherichia coli BL21

25 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_01084 DUF177 family protein 1.0 ECD_00071 transcriptional DNA-binding transcriptional activator of sgrS sRNA 0.75 18
Escherichia coli ECRC102 1.00 NIAGMN_24230 yceD 23S rRNA accumulation protein YceD 1.00 NIAGMN_08590 sgrR DNA-binding transcriptional regulator SgrR — —
Escherichia coli ECRC101 1.00 MCAODC_22960 yceD 23S rRNA accumulation protein YceD 1.00 MCAODC_01255 sgrR DNA-binding transcriptional regulator SgrR low > 87
Escherichia coli ECRC62 1.00 BNILDI_19290 yceD 23S rRNA accumulation protein YceD 0.99 BNILDI_08515 sgrR DNA-binding transcriptional regulator SgrR 0.78 37
Escherichia coli ECRC98 1.00 JDDGAC_07260 yceD 23S rRNA accumulation protein YceD 1.00 JDDGAC_14335 sgrR DNA-binding transcriptional regulator SgrR low > 86
Escherichia coli BW25113 1.00 b1088 yceD hypothetical protein (NCBI) 0.99 b0069 sgrR DNA-binding transcriptional regulator (NCBI) low > 76
Escherichia coli ECOR38 1.00 HEPCGN_23880 yceD 23S rRNA accumulation protein YceD 0.98 HEPCGN_08725 sgrR DNA-binding transcriptional regulator SgrR low > 87
Escherichia coli ECOR27 1.00 NOLOHH_21130 yceD 23S rRNA accumulation protein YceD 1.00 NOLOHH_03095 sgrR DNA-binding transcriptional regulator SgrR low > 75
Escherichia coli ECRC100 1.00 OKFHMN_03600 yceD 23S rRNA accumulation protein YceD 1.00 OKFHMN_10740 sgrR DNA-binding transcriptional regulator SgrR low > 80
Escherichia coli ECRC99 1.00 KEDOAH_24155 yceD 23S rRNA accumulation protein YceD 1.00 KEDOAH_17415 sgrR DNA-binding transcriptional regulator SgrR — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS06290 23S rRNA accumulation protein YceD 1.00 ECOLIN_RS00375 DNA-binding transcriptional regulator SgrR low > 55
Escherichia fergusonii Becca 1.00 EFB2_02887 Large ribosomal RNA subunit accumulation protein YceD 0.98 EFB2_03976 HTH-type transcriptional regulator SgrR low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_02578 Large ribosomal RNA subunit accumulation protein YceD 0.99 OHPLBJKB_03589 HTH-type transcriptional regulator SgrR low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.97 GFF3370 COG1399 protein, clustered with ribosomal protein L32p 0.86 GFF170 SgrR, sugar-phosphate stress, transcriptional activator of SgrS small RNA low > 78
Enterobacter sp. TBS_079 0.94 MPMX20_01768 Large ribosomal RNA subunit accumulation protein YceD 0.82 MPMX20_00763 HTH-type transcriptional regulator SgrR low > 85
Enterobacter asburiae PDN3 0.94 EX28DRAFT_1841 Predicted metal-binding, possibly nucleic acid-binding protein 0.82 EX28DRAFT_3661 ABC-type uncharacterized transport system, periplasmic component low > 76
Klebsiella michiganensis M5al 0.87 BWI76_RS11065 hypothetical protein 0.80 BWI76_RS04620 transcriptional regulator SgrR — —
Rahnella sp. WP5 0.85 EX31_RS24410 23S rRNA accumulation protein YceD 0.65 EX31_RS03715 HTH-type transcriptional regulator SgrR low > 89
Pectobacterium carotovorum WPP14 0.84 HER17_RS08625 23S rRNA accumulation protein YceD 0.65 HER17_RS03040 HTH-type transcriptional regulator SgrR low > 75
Erwinia tracheiphila SCR3 0.84 LU632_RS14845 yceD 23S rRNA accumulation protein YceD 0.68 LU632_RS02840 sgrR HTH-type transcriptional regulator SgrR low > 74
Dickeya dadantii 3937 0.84 DDA3937_RS13145 23S rRNA accumulation protein YceD 0.68 DDA3937_RS18150 HTH-type transcriptional regulator SgrR low > 74
Dickeya dianthicola ME23 0.83 DZA65_RS13680 23S rRNA accumulation protein YceD 0.68 DZA65_RS19245 HTH-type transcriptional regulator SgrR — —
Dickeya dianthicola 67-19 0.82 HGI48_RS13210 23S rRNA accumulation protein YceD 0.67 HGI48_RS18095 HTH-type transcriptional regulator SgrR low > 71
Pantoea sp. MT58 0.79 IAI47_12095 23S rRNA accumulation protein YceD 0.69 IAI47_16025 HTH-type transcriptional regulator SgrR — —
Serratia liquefaciens MT49 0.73 IAI46_09765 23S rRNA accumulation protein YceD 0.66 IAI46_03320 HTH-type transcriptional regulator SgrR — —
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_10120 23S rRNA accumulation protein YceD 0.28 CSW01_17115 SgrR family transcriptional regulator — —

Not shown: 26 genomes with orthologs for ECD_01084 only; 0 genomes with orthologs for ECD_00071 only