Conservation of cofitness between CSW01_01710 and CSW01_14180 in Vibrio cholerae E7946 ATCC 55056

25 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01710 Rsd/AlgQ family anti-sigma factor 1.0 CSW01_14180 hypothetical protein 0.60 10
Shewanella oneidensis MR-1 0.39 SO0433 rsd regulator of sigma D (NCBI ptt file) 0.28 SO3571 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.38 Shewana3_0434 anti-RNA polymerase sigma 70 factor (RefSeq) 0.25 Shewana3_1584 hypothetical protein (RefSeq) low > 73
Shewanella loihica PV-4 0.36 Shew_3423 anti-RNA polymerase sigma 70 factor (RefSeq) 0.20 Shew_2355 hypothetical protein (RefSeq) low > 60
Serratia liquefaciens MT49 0.32 IAI46_01325 Rsd/AlgQ family anti-sigma factor 0.21 IAI46_08910 DUF2057 family protein low > 87
Pantoea sp. MT58 0.31 IAI47_18080 Rsd/AlgQ family anti-sigma factor 0.14 IAI47_12610 DUF2057 family protein low > 76
Pantoea agglomerans CFBP13505 P0401 0.31 PagCFBP13505_RS22615 Rsd/AlgQ family anti-sigma factor 0.14 PagCFBP13505_RS04720 DUF2057 domain-containing protein low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF4197 Regulator of sigma D 0.16 GFF3255 UPF0319 protein YccT precursor low > 78
Escherichia coli ECRC62 0.29 BNILDI_06010 rsd sigma D regulator 0.16 BNILDI_19920 yccT DUF2057 domain-containing protein low > 75
Escherichia coli BL21 0.29 ECD_03872 stationary phase protein, binds sigma 70 RNA polymerase subunit 0.16 ECD_00968 UPF0319 family protein low > 61
Escherichia coli ECOR27 0.29 NOLOHH_05515 rsd sigma D regulator 0.16 NOLOHH_21755 yccT DUF2057 domain-containing protein low > 76
Escherichia coli ECOR38 0.29 HEPCGN_12005 rsd sigma D regulator 0.16 HEPCGN_23320 yccT DUF2057 domain-containing protein low > 88
Escherichia coli ECRC102 0.29 NIAGMN_11120 rsd sigma D regulator 0.16 NIAGMN_02920 yccT DUF2057 domain-containing protein low > 80
Escherichia coli ECRC100 0.29 OKFHMN_13370 rsd sigma D regulator 0.16 OKFHMN_05200 yccT DUF2057 domain-containing protein low > 79
Escherichia coli ECRC99 0.29 KEDOAH_14790 rsd sigma D regulator 0.16 KEDOAH_22535 yccT DUF2057 domain-containing protein — —
Escherichia coli ECRC101 0.29 MCAODC_03870 rsd sigma D regulator 0.16 MCAODC_24590 yccT DUF2057 domain-containing protein low > 87
Escherichia coli BW25113 0.29 b3995 rsd stationary phase protein, binds sigma 70 RNA polymerase subunit (NCBI) 0.16 b0964 yccT hypothetical protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_04055 Regulator of sigma D 0.16 OHPLBJKB_02702 hypothetical protein low > 74
Escherichia coli ECRC98 0.29 JDDGAC_16995 rsd sigma D regulator 0.16 JDDGAC_08810 yccT DUF2057 domain-containing protein low > 87
Escherichia coli Nissle 1917 0.29 ECOLIN_RS23045 sigma D regulator 0.16 ECOLIN_RS05065 DUF2057 family protein — —
Escherichia fergusonii Becca 0.29 EFB2_04616 Regulator of sigma D 0.16 EFB2_03107 hypothetical protein low > 86
Enterobacter asburiae PDN3 0.27 EX28DRAFT_4537 Regulator of sigma D 0.16 EX28DRAFT_1979 Uncharacterized protein conserved in bacteria low > 76
Erwinia amylovora T8 0.25 OLJFJH_06745 sigma D regulator 0.12 OLJFJH_15900 DUF2057 domain-containing protein low > 58
Dickeya dianthicola ME23 0.21 DZA65_RS01220 Rsd/AlgQ family anti-sigma factor 0.13 DZA65_RS16110 DUF2057 family protein low > 75
Dickeya dianthicola 67-19 0.20 HGI48_RS01175 sigma D regulator 0.13 HGI48_RS15285 DUF2057 family protein low > 71
Dickeya dadantii 3937 0.20 DDA3937_RS01180 Rsd/AlgQ family anti-sigma factor 0.16 DDA3937_RS15210 DUF2057 family protein low > 74

Not shown: 33 genomes with orthologs for CSW01_01710 only; 0 genomes with orthologs for CSW01_14180 only