Conservation of cofitness between CSW01_00425 and CSW01_02100 in Vibrio cholerae E7946 ATCC 55056

27 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00425 universal stress protein B 1.0 CSW01_02100 RNase E specificity factor CsrD 0.65 18
Escherichia coli ECRC98 0.49 JDDGAC_20065 uspB universal stress protein UspB 0.25 JDDGAC_21345 csrD RNase E specificity factor CsrD low > 87
Escherichia coli BW25113 0.49 b3494 yhiO universal stress protein UspB (NCBI) 0.25 b3252 yhdA conserved inner membrane protein (NCBI) low > 76
Escherichia fergusonii Becca 0.49 EFB2_00321 Universal stress protein B 0.25 EFB2_00579 RNase E specificity factor CsrD low > 86
Escherichia coli ECRC101 0.49 MCAODC_06950 uspB universal stress protein UspB 0.25 MCAODC_08240 csrD RNase E specificity factor CsrD low > 87
Escherichia coli ECRC100 0.49 OKFHMN_16435 uspB universal stress protein UspB 0.25 OKFHMN_17720 csrD RNase E specificity factor CsrD low > 79
Escherichia coli ECRC62 0.49 BNILDI_03190 uspB universal stress protein UspB 0.25 BNILDI_02015 csrD RNase E specificity factor CsrD low > 75
Escherichia coli ECRC102 0.49 NIAGMN_14200 uspB universal stress protein UspB 0.25 NIAGMN_15480 csrD RNase E specificity factor CsrD low > 80
Escherichia coli BL21 0.49 ECD_03343 universal stress (ethanol tolerance) protein B 0.25 ECD_03111 targeting factor for csrBC sRNA degradation low > 61
Escherichia coli Nissle 1917 0.49 ECOLIN_RS19965 universal stress protein UspB 0.25 ECOLIN_RS18635 RNase E specificity factor CsrD low > 55
Escherichia coli ECRC99 0.49 KEDOAH_11710 uspB universal stress protein UspB 0.25 KEDOAH_10430 csrD RNase E specificity factor CsrD — —
Escherichia coli ECOR27 0.49 NOLOHH_08370 uspB universal stress protein UspB 0.25 NOLOHH_09505 csrD RNase E specificity factor CsrD low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_00209 Universal stress protein B 0.25 OHPLBJKB_00453 RNase E specificity factor CsrD low > 74
Escherichia coli ECOR38 0.49 HEPCGN_15350 uspB universal stress protein UspB 0.25 HEPCGN_16585 csrD RNase E specificity factor CsrD low > 88
Serratia liquefaciens MT49 0.48 IAI46_24155 universal stress protein UspB 0.29 IAI46_22725 RNase E specificity factor CsrD low > 87
Klebsiella pneumoniae MKP103 0.48 KDGMDA_07405 universal stress protein UspB 0.23 KDGMDA_06280 Lipoprotein low > 95
Pectobacterium carotovorum WPP14 0.48 HER17_RS21330 universal stress protein UspB 0.25 HER17_RS20175 RNase E specificity factor CsrD low > 75
Dickeya dianthicola 67-19 0.48 HGI48_RS21015 universal stress protein UspB 0.26 HGI48_RS01345 RNase E specificity factor CsrD low > 71
Dickeya dianthicola ME23 0.48 DZA65_RS22000 universal stress protein UspB 0.26 DZA65_RS01405 RNase E specificity factor CsrD low > 75
Dickeya dadantii 3937 0.48 DDA3937_RS00350 universal stress protein UspB 0.25 DDA3937_RS01425 RNase E specificity factor CsrD low > 74
Rahnella sp. WP5 0.47 EX31_RS05150 universal stress protein UspB 0.26 EX31_RS12230 RNase E specificity factor CsrD low > 89
Klebsiella michiganensis M5al 0.47 BWI76_RS26575 universal stress protein B 0.24 BWI76_RS25505 RNase E specificity factor CsrD low > 92
Pantoea sp. MT58 0.47 IAI47_01360 universal stress protein UspB 0.22 IAI47_02430 RNase E specificity factor CsrD low > 76
Pantoea agglomerans CFBP13505 P0401 0.47 PagCFBP13505_RS17860 universal stress protein UspB 0.22 PagCFBP13505_RS11025 RNase E specificity factor CsrD low > 74
Enterobacter sp. TBS_079 0.47 MPMX20_04394 Universal stress protein B 0.25 MPMX20_04158 RNase E specificity factor CsrD low > 85
Enterobacter asburiae PDN3 0.47 EX28DRAFT_4066 Universal stress protein B (UspB) 0.26 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain low > 76
Erwinia amylovora T8 0.46 OLJFJH_04515 universal stress protein UspB 0.22 OLJFJH_06905 RNase E specificity factor CsrD low > 58
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF521 Universal stress protein B 0.24 GFF2133 RNase E specificity factor CsrD low > 78

Not shown: 0 genomes with orthologs for CSW01_00425 only; 6 genomes with orthologs for CSW01_02100 only