Conservation of cofitness between CSW01_02100 and CSW01_00765 in Vibrio cholerae E7946 ATCC 55056

26 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02100 RNase E specificity factor CsrD 1.0 CSW01_00765 Si-specific NAD(P)(+) transhydrogenase 0.78 10
Serratia liquefaciens MT49 0.29 IAI46_22725 RNase E specificity factor CsrD 0.78 IAI46_24470 Si-specific NAD(P)(+) transhydrogenase low > 86
Dickeya dianthicola ME23 0.26 DZA65_RS01405 RNase E specificity factor CsrD 0.77 DZA65_RS21445 Si-specific NAD(P)(+) transhydrogenase low > 75
Dickeya dianthicola 67-19 0.26 HGI48_RS01345 RNase E specificity factor CsrD 0.77 HGI48_RS20400 Si-specific NAD(P)(+) transhydrogenase low > 71
Rahnella sp. WP5 0.26 EX31_RS12230 RNase E specificity factor CsrD 0.78 EX31_RS14165 Si-specific NAD(P)(+) transhydrogenase low > 89
Enterobacter asburiae PDN3 0.26 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain 0.79 EX28DRAFT_4425 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes low > 76
Escherichia coli ECOR38 0.25 HEPCGN_16585 csrD RNase E specificity factor CsrD 0.78 HEPCGN_12205 sthA Si-specific NAD(P)(+) transhydrogenase low > 87
Dickeya dadantii 3937 0.25 DDA3937_RS01425 RNase E specificity factor CsrD 0.78 DDA3937_RS00975 Si-specific NAD(P)(+) transhydrogenase low > 74
Escherichia coli ECRC101 0.25 MCAODC_08240 csrD RNase E specificity factor CsrD 0.78 MCAODC_04060 sthA Si-specific NAD(P)(+) transhydrogenase low > 87
Escherichia coli ECRC99 0.25 KEDOAH_10430 csrD RNase E specificity factor CsrD 0.78 KEDOAH_14600 sthA Si-specific NAD(P)(+) transhydrogenase — —
Escherichia coli ECRC62 0.25 BNILDI_02015 csrD RNase E specificity factor CsrD 0.78 BNILDI_05830 sthA Si-specific NAD(P)(+) transhydrogenase low > 75
Escherichia coli Nissle 1917 0.25 ECOLIN_RS18635 RNase E specificity factor CsrD 0.78 ECOLIN_RS22875 Si-specific NAD(P)(+) transhydrogenase low > 55
Escherichia coli ECRC100 0.25 OKFHMN_17720 csrD RNase E specificity factor CsrD 0.78 OKFHMN_13560 sthA Si-specific NAD(P)(+) transhydrogenase — —
Escherichia coli ECRC98 0.25 JDDGAC_21345 csrD RNase E specificity factor CsrD 0.78 JDDGAC_17185 sthA Si-specific NAD(P)(+) transhydrogenase low > 86
Escherichia coli ECOR27 0.25 NOLOHH_09505 csrD RNase E specificity factor CsrD 0.78 NOLOHH_05695 sthA Si-specific NAD(P)(+) transhydrogenase low > 75
Escherichia coli ECRC102 0.25 NIAGMN_15480 csrD RNase E specificity factor CsrD 0.78 NIAGMN_11310 sthA Si-specific NAD(P)(+) transhydrogenase — —
Escherichia fergusonii Becca 0.25 EFB2_00579 RNase E specificity factor CsrD 0.78 EFB2_04650 Soluble pyridine nucleotide transhydrogenase low > 86
Escherichia coli BL21 0.25 ECD_03111 targeting factor for csrBC sRNA degradation 0.78 ECD_03847 pyridine nucleotide transhydrogenase, soluble low > 61
Escherichia coli BW25113 0.25 b3252 yhdA conserved inner membrane protein (NCBI) 0.78 b3962 udhA putative oxidoreductase (VIMSS) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.25 OHPLBJKB_00453 RNase E specificity factor CsrD 0.78 OHPLBJKB_04088 Soluble pyridine nucleotide transhydrogenase low > 73
Enterobacter sp. TBS_079 0.25 MPMX20_04158 RNase E specificity factor CsrD 0.79 MPMX20_04518 Soluble pyridine nucleotide transhydrogenase low > 85
Pectobacterium carotovorum WPP14 0.25 HER17_RS20175 RNase E specificity factor CsrD 0.78 HER17_RS00960 Si-specific NAD(P)(+) transhydrogenase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF2133 RNase E specificity factor CsrD 0.76 GFF2348 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) low > 78
Klebsiella michiganensis M5al 0.24 BWI76_RS25505 RNase E specificity factor CsrD 0.79 BWI76_RS00870 NAD(P)(+) transhydrogenase — —
Erwinia tracheiphila SCR3 0.24 LU632_RS21455 csrD RNase E specificity factor CsrD 0.77 LU632_RS19585 sthA Si-specific NAD(P)(+) transhydrogenase low > 74
Erwinia amylovora T8 0.22 OLJFJH_06905 RNase E specificity factor CsrD 0.77 OLJFJH_06145 Si-specific NAD(P)(+) transhydrogenase low > 58
Pantoea sp. MT58 0.22 IAI47_02430 RNase E specificity factor CsrD 0.77 IAI47_00935 Si-specific NAD(P)(+) transhydrogenase low > 76

Not shown: 4 genomes with orthologs for CSW01_02100 only; 26 genomes with orthologs for CSW01_00765 only