Conservation of cofitness between SO2093 and SO1208 in Shewanella oneidensis MR-1

19 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO2093 hypB hydrogenase accessory protein HypB (NCBI ptt file) 1.0 SO1208 GGDEF domain protein (NCBI ptt file) 0.28 11
Shewanella sp. ANA-3 0.84 Shewana3_1871 hydrogenase accessory protein HypB (RefSeq) 0.90 Shewana3_1034 diguanylate cyclase/phosphodiesterase (RefSeq) low > 73
Shewanella loihica PV-4 0.70 Shew_1759 hydrogenase accessory protein HypB (RefSeq) 0.82 Shew_2823 diguanylate cyclase/phosphodiesterase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.69 Sama_1673 hydrogenase accessory protein HypB (RefSeq) 0.85 Sama_0965 GGDEF domain-containing protein (RefSeq) low > 62
Rhodospirillum rubrum S1H 0.41 Rru_A0302 Hydrogenase accessory protein HypB (NCBI) 0.36 Rru_A2604 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) (NCBI) low > 58
Escherichia fergusonii Becca 0.36 EFB2_01196 Hydrogenase maturation factor HypB 0.21 EFB2_00279 putative cyclic di-GMP phosphodiesterase PdeK low > 86
Serratia liquefaciens MT49 0.36 IAI46_12550 hydrogenase nickel incorporation protein HypB 0.25 IAI46_00545 biofilm formation regulator HmsP low > 86
Escherichia coli ECRC62 0.35 BNILDI_10955 hypB hydrogenase nickel incorporation protein HypB 0.21 BNILDI_03400 hmsP biofilm formation regulator HmsP low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.35 OHPLBJKB_01007 Hydrogenase maturation factor HypB 0.21 OHPLBJKB_00173 putative cyclic di-GMP phosphodiesterase PdeK low > 74
Escherichia coli Nissle 1917 0.35 ECOLIN_RS15240 hydrogenase nickel incorporation protein HypB 0.21 ECOLIN_RS20185 biofilm formation regulator HmsP low > 55
Escherichia coli ECOR27 0.35 NOLOHH_12405 hypB hydrogenase nickel incorporation protein HypB 0.21 NOLOHH_08155 hmsP biofilm formation regulator HmsP low > 76
Escherichia coli ECOR38 0.35 HEPCGN_19750 hypB hydrogenase nickel incorporation protein HypB 0.21 HEPCGN_15095 hmsP biofilm formation regulator HmsP low > 88
Escherichia coli BW25113 0.35 b2727 hypB GTP hydrolase involved in nickel liganding into hydrogenases (NCBI) 0.21 b3529 yhjK predicted diguanylate cyclase (RefSeq) low > 76
Escherichia coli BL21 0.35 ECD_02577 GTP hydrolase 0.21 ECD_03377 cyclic-di-GMP phosphodiesterase low > 61
Escherichia coli ECRC98 0.35 JDDGAC_24225 hypB hydrogenase nickel incorporation protein HypB 0.21 JDDGAC_19820 hmsP biofilm formation regulator HmsP low > 87
Escherichia coli ECRC100 0.35 OKFHMN_20560 hypB hydrogenase nickel incorporation protein HypB 0.21 OKFHMN_16190 hmsP biofilm formation regulator HmsP low > 79
Escherichia coli ECRC99 0.35 KEDOAH_07575 hypB hydrogenase nickel incorporation protein HypB 0.21 KEDOAH_11960 hmsP biofilm formation regulator HmsP — —
Escherichia coli ECRC101 0.35 MCAODC_11085 hypB hydrogenase nickel incorporation protein HypB 0.21 MCAODC_06705 hmsP biofilm formation regulator HmsP low > 88
Escherichia coli ECRC102 0.35 NIAGMN_18330 hypB hydrogenase nickel incorporation protein HypB 0.21 NIAGMN_13955 hmsP biofilm formation regulator HmsP low > 80
Klebsiella pneumoniae MKP103 0.31 KDGMDA_03020 hydrogenase nickel incorporation protein HypB 0.20 KDGMDA_07505 biofilm formation regulator HmsP low > 95

Not shown: 12 genomes with orthologs for SO2093 only; 20 genomes with orthologs for SO1208 only