Conservation of cofitness between b0960 and b3460 in Escherichia coli BW25113

25 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0960 b0960 orf, hypothetical protein (VIMSS) 1.0 b3460 livJ leucine/isoleucine/valine transporter subunit (NCBI) 0.34 3
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02706 Inner membrane protein YccS 1.00 OHPLBJKB_00243 Leu/Ile/Val-binding protein low > 73
Escherichia coli BL21 1.00 ECD_00964 putative transporter, FUSC superfamily inner membrane protein 1.00 ECD_03309 branched-chain amino acid ABC transporter periplasmic binding protein low > 60
Escherichia coli ECRC102 1.00 NIAGMN_02940 yccS Inner membrane protein YccS 1.00 NIAGMN_14490 livJ branched chain amino acid ABC transporter substrate-binding protein LivJ — —
Escherichia coli ECRC99 1.00 KEDOAH_22515 yccS Inner membrane protein YccS 1.00 KEDOAH_11420 livJ branched chain amino acid ABC transporter substrate-binding protein LivJ — —
Escherichia coli ECRC98 1.00 JDDGAC_08830 yccS Inner membrane protein YccS 1.00 JDDGAC_20350 livJ branched chain amino acid ABC transporter substrate-binding protein LivJ — —
Escherichia coli ECRC101 1.00 MCAODC_24610 yccS Inner membrane protein YccS 1.00 MCAODC_07250 livJ branched chain amino acid ABC transporter substrate-binding protein LivJ — —
Escherichia coli ECRC101 1.00 OKFHMN_05220 yccS Inner membrane protein YccS 1.00 OKFHMN_16720 livJ branched chain amino acid ABC transporter substrate-binding protein LivJ — —
Escherichia coli ECRC62 1.00 BNILDI_19940 yccS Inner membrane protein YccS 0.99 BNILDI_02990 livJ branched chain amino acid ABC transporter substrate-binding protein LivJ — —
Escherichia coli ECOR27 1.00 NOLOHH_21775 yccS Inner membrane protein YccS 1.00 NOLOHH_08525 livJ branched chain amino acid ABC transporter substrate-binding protein LivJ low > 57
Escherichia coli Nissle 1917 1.00 ECOLIN_RS05045 YccS family putative transporter 1.00 ECOLIN_RS19790 branched chain amino acid ABC transporter substrate-binding protein LivJ — —
Escherichia coli ECOR38 1.00 HEPCGN_23300 yccS Inner membrane protein YccS 1.00 HEPCGN_15550 livJ branched chain amino acid ABC transporter substrate-binding protein LivJ low > 85
Escherichia fergusonii Becca 1.00 EFB2_03111 Inner membrane protein YccS 1.00 EFB2_00362 Leu/Ile/Val-binding protein low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF3251 Putative efflux (PET) family inner membrane protein YccS 0.95 GFF545 High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1) low > 78
Enterobacter asburiae PDN3 0.82 EX28DRAFT_1983 TIGR01666 family membrane protein 0.94 EX28DRAFT_4293 ABC-type branched-chain amino acid transport systems, periplasmic component 0.44 55
Enterobacter sp. TBS_079 0.82 MPMX20_01610 Inner membrane protein YccS 0.95 MPMX20_04336 Leu/Ile/Val-binding protein low > 85
Klebsiella michiganensis M5al 0.81 BWI76_RS09985 membrane protein 0.95 BWI76_RS26365 branched chain amino acid ABC transporter substrate-binding protein low > 92
Serratia liquefaciens MT49 0.69 IAI46_08890 TIGR01666 family membrane protein 0.80 IAI46_00960 branched-chain amino acid ABC transporter substrate-binding protein low > 86
Rahnella sp. WP5 0.67 EX31_RS18025 TIGR01666 family membrane protein 0.79 EX31_RS14805 branched-chain amino acid ABC transporter substrate-binding protein low > 89
Dickeya dianthicola 67-19 0.66 HGI48_RS15305 TIGR01666 family membrane protein 0.79 HGI48_RS20730 high-affinity branched-chain amino acid ABC transporter substrate-binding protein low > 71
Dickeya dianthicola ME23 0.66 DZA65_RS16130 TIGR01666 family membrane protein 0.79 DZA65_RS21740 branched-chain amino acid ABC transporter substrate-binding protein low > 75
Dickeya dadantii 3937 0.66 DDA3937_RS15230 TIGR01666 family membrane protein 0.81 DDA3937_RS00660 branched-chain amino acid ABC transporter substrate-binding protein low > 74
Pseudomonas fluorescens SBW25 0.36 PFLU_RS28030 TIGR01666 family membrane protein 0.58 PFLU_RS06645 branched-chain amino acid ABC transporter substrate-binding protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.36 PFLU_RS28030 TIGR01666 family membrane protein 0.58 PFLU_RS06645 branched-chain amino acid ABC transporter substrate-binding protein low > 109
Pseudomonas simiae WCS417 0.35 PS417_26380 YccS/YhfK family integral membrane protein 0.58 PS417_06615 ABC transporter for branched-chain amino acids, substrate-binding component (from data) low > 88
Herbaspirillum seropedicae SmR1 0.11 HSERO_RS10560 membrane protein 0.51 HSERO_RS08270 amino acid ABC transporter substrate-binding protein low > 78

Not shown: 27 genomes with orthologs for b0960 only; 7 genomes with orthologs for b3460 only