Homologs of HMPREF1078_RS11925 from Parabacteroides merdae CL09T00C40

RNA polymerase sigma-70 factor
SEED: RNA polymerase ECF-type sigma factor

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS11925 RNA polymerase sigma-70 factor strong 100 100
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS02810 RNA polymerase sigma-70 factor insig. 60 97
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04750 RNA polymerase sigma-70 factor insig. 63 98
o Phocaeicola dorei CL03T12C01 ABI39_RS02605 RNA polymerase sigma-70 factor insig. 58 98
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05780 RNA polymerase sigma-70 factor insig. 54 98
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS11490 RNA polymerase sigma-70 factor insig. 49 98
  Phocaeicola dorei CL03T12C01 ABI39_RS09110 RNA polymerase sigma-70 factor insig. 50 94
o Bacteroides stercoris CC31F HMPREF1181_RS00820 RNA polymerase sigma-70 factor insig. 48 94
  Phocaeicola dorei CL03T12C01 ABI39_RS08670 RNA polymerase sigma-70 factor cofit 48 95
  Phocaeicola dorei CL03T12C01 ABI39_RS10845 RNA polymerase sigma-70 factor insig. 46 95
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS15055 RNA polymerase sigma-70 factor sig. 44 95
  Bacteroides thetaiotaomicron VPI-5482 BT2562 putative RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 52 75
  Bacteroides thetaiotaomicron VPI-5482 BT3748 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 44 93
  Bacteroides thetaiotaomicron VPI-5482 BT2463 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 39 95
  Bacteroides thetaiotaomicron VPI-5482 BT2198 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 30 95
  Phocaeicola dorei CL03T12C01 ABI39_RS00860 RNA polymerase sigma-70 factor insig. 37 94
o Bacteroides ovatus ATCC 8483 BACOVA_01977 RNA polymerase sigma-70 factor insig. 34 96
  Bacteroides ovatus ATCC 8483 BACOVA_05174 RNA polymerase sigma-70 factor insig. 35 92
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05010 RNA polymerase sigma-70 factor insig. 33 93
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS15190 RNA polymerase sigma-70 factor cofit 32 94
  Phocaeicola dorei CL03T12C01 ABI39_RS18115 RNA polymerase sigma-70 factor insig. 35 94
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS03570 RNA polymerase sigma-70 factor insig. 33 95
  Bacteroides ovatus ATCC 8483 BACOVA_03594 RNA polymerase sigma-70 factor insig. 32 96
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04080 RNA polymerase sigma-70 factor insig. 33 95
  Bacteroides ovatus ATCC 8483 BACOVA_04866 RNA polymerase sigma-70 factor insig. 31 88
  Bacteroides thetaiotaomicron VPI-5482 BT4355 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 35 92
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05735 RNA polymerase sigma-70 factor insig. 31 96
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3656 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 30 98
  Bacteroides thetaiotaomicron VPI-5482 BT4070 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 30 88
  Phocaeicola dorei CL03T12C01 ABI39_RS08655 RNA polymerase sigma-70 factor insig. 32 96
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3527 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 30 93
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS13420 RNA polymerase sigma-70 factor insig. 31 96
  Bacteroides ovatus ATCC 8483 BACOVA_04092 RNA polymerase sigma-70 factor insig. 30 96
  Bacteroides ovatus ATCC 8483 BACOVA_02951 RNA polymerase sigma-70 factor insig. 29 94
  Bacteroides thetaiotaomicron VPI-5482 BT1877 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 31 94
  Bacteroides thetaiotaomicron VPI-5482 BT0188 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 29 92
  Phocaeicola dorei CL03T12C01 ABI39_RS10155 RNA polymerase sigma-70 factor insig. 29 93
  Bacteroides thetaiotaomicron VPI-5482 BT3010 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 30 97
  Phocaeicola dorei CL03T12C01 ABI39_RS06310 RNA polymerase sigma-70 factor cofit 31 93
  Bacteroides ovatus ATCC 8483 BACOVA_02944 RNA polymerase sigma-70 factor insig. 29 89
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS00770 RNA polymerase sigma-70 factor insig. 29 94
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS00265 RNA polymerase sigma-70 factor insig. 31 97
  Bacteroides thetaiotaomicron VPI-5482 BT1053 RNA polymerase ECF-type sigma factor (NCBI ptt file) no data 30 93
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS10785 RNA polymerase sigma-70 factor insig. 30 93
  Bacteroides ovatus ATCC 8483 BACOVA_05184 RNA polymerase sigma-70 factor insig. 31 92
  Bacteroides thetaiotaomicron VPI-5482 BT4643 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 30 94
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05575 RNA polymerase sigma-70 factor insig. 30 88
  Phocaeicola dorei CL03T12C01 ABI39_RS02030 RNA polymerase sigma-70 factor insig. 30 96
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS13360 RNA polymerase sigma-70 factor insig. 28 95
  Bacteroides ovatus ATCC 8483 BACOVA_03283 RNA polymerase sigma-70 factor insig. 27 94
  Bacteroides ovatus ATCC 8483 BACOVA_05556 RNA polymerase sigma-70 factor insig. 29 91
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS02700 RNA polymerase sigma-70 factor insig. 27 94
  Bacteroides ovatus ATCC 8483 BACOVA_01251 RNA polymerase sigma-70 factor sig. 32 92
  Bacteroides stercoris CC31F HMPREF1181_RS04900 RNA polymerase sigma-70 factor insig. 29 89
  Bacteroides ovatus ATCC 8483 BACOVA_00771 RNA polymerase sigma-70 factor insig. 29 87
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4534 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 29 97
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS17460 RNA polymerase sigma-70 factor insig. 26 96
  Bacteroides ovatus ATCC 8483 BACOVA_05457 RNA polymerase sigma-70 factor insig. 28 94
  Bacteroides thetaiotaomicron VPI-5482 BT4705 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 29 90
  Bacteroides thetaiotaomicron VPI-5482 BT3037 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 28 90
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2168 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 31 90
  Phocaeicola dorei CL03T12C01 ABI39_RS03220 RNA polymerase sigma-70 factor insig. 30 86
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS20645 RNA polymerase subunit sigma-70 insig. 26 97
  Bacteroides stercoris CC31F HMPREF1181_RS10020 RNA polymerase sigma-70 factor cofit 28 87
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3924 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 strong 29 91
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS00780 RNA polymerase sigma-70 factor insig. 28 92
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS06645 RNA polymerase sigma-70 factor insig. 26 98
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS14710 hypothetical protein insig. 28 91
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS08940 RNA polymerase sigma-70 factor insig. 29 86
  Phocaeicola dorei CL03T12C01 ABI39_RS01635 RNA polymerase sigma-70 factor insig. 27 96
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS07030 RNA polymerase sigma-70 factor insig. 28 94
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS15195 RNA polymerase sigma-70 factor insig. 28 91
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS06675 RNA polymerase sigma-70 factor insig. 28 96
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05690 RNA polymerase sigma-70 factor insig. 27 87
  Bacteroides ovatus ATCC 8483 BACOVA_00923 RNA polymerase sigma-70 factor insig. 28 94
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS02575 hypothetical protein insig. 33 82
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS09605 RNA polymerase sigma-70 factor insig. 31 88
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS18610 RNA polymerase sigma-70 factor insig. 27 91
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS02390 RNA polymerase sigma-70 factor insig. 27 96
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1926 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 31 96
  Phocaeicola dorei CL03T12C01 ABI39_RS00120 RNA polymerase sigma-70 factor insig. 30 91
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2852 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 strong 27 90
  Phocaeicola dorei CL03T12C01 ABI39_RS10300 RNA polymerase sigma-70 factor sig. 30 86
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS21040 RNA polymerase sigma-70 factor insig. 30 95
  Bacteroides thetaiotaomicron VPI-5482 BT0966 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 28 94
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS17775 hypothetical protein sig. 28 91
  Bacteroides stercoris CC31F HMPREF1181_RS01060 RNA polymerase sigma-70 factor insig. 28 93
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10380 RNA polymerase subunit sigma-70 insig. 26 97
  Bacteroides thetaiotaomicron VPI-5482 BT4250 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 27 95
  Bacteroides thetaiotaomicron VPI-5482 BT2169 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 28 86
  Bacteroides ovatus ATCC 8483 BACOVA_00842 RNA polymerase sigma-70 factor insig. 28 97
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_11515 RNA polymerase sigma-70 factor insig. 26 94
  Phocaeicola dorei CL03T12C01 ABI39_RS05700 RNA polymerase sigma-70 factor insig. 27 95
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS05970 RNA polymerase sigma factor insig. 26 91
  Bacteroides ovatus ATCC 8483 BACOVA_04151 RNA polymerase sigma-70 factor insig. 26 96
  Bacteroides ovatus ATCC 8483 BACOVA_03176 RNA polymerase sigma-70 factor insig. 27 86
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS00160 hypothetical protein insig. 27 96
  Bacteroides ovatus ATCC 8483 BACOVA_05151 RNA polymerase sigma-70 factor insig. 30 95
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS09175 RNA polymerase sigma factor sig. 28 88
  Rhodanobacter denitrificans MT42 LRK55_RS16655 RNA polymerase sigma factor RpoE no data 27 94