Conservation of cofitness between PP_2406 and PP_2060 in Pseudomonas putida KT2440

24 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2406 putative quinate/shikimate dehydrogenase 1.0 PP_2060 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent 0.17 6
Pseudomonas sp. RS175 0.73 PFR28_03811 Quinate/shikimate dehydrogenase (NAD(+)) 0.55 PFR28_02914 Redox-sensitive transcriptional activator SoxR low > 88
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_5061 Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25) 0.58 Pf6N2E2_6074 Redox-sensitive transcriptional activator SoxR low > 103
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_1427 Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25) 0.55 PfGW456L13_2312 Redox-sensitive transcriptional activator SoxR low > 87
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS26360 shikimate dehydrogenase 0.54 PFLU_RS10090 redox-sensitive transcriptional activator SoxR low > 109
Pseudomonas fluorescens FW300-N2C3 0.70 AO356_15590 shikimate dehydrogenase 0.59 AO356_20930 MerR family transcriptional regulator low > 104
Pseudomonas fluorescens SBW25 0.70 PFLU_RS26360 shikimate dehydrogenase 0.54 PFLU_RS10090 redox-sensitive transcriptional activator SoxR low > 109
Pseudomonas simiae WCS417 0.69 PS417_24435 shikimate dehydrogenase 0.54 PS417_09440 MerR family transcriptional regulator low > 88
Azospirillum sp. SherDot2 0.57 MPMX19_03526 Quinate/shikimate dehydrogenase (NAD(+)) 0.53 MPMX19_05872 Redox-sensitive transcriptional activator SoxR low > 112
Sinorhizobium meliloti 1021 0.51 SM_b20037 shikimate 5-dehydrogenase 0.60 SMc00182 transcriptional regulator — —
Agrobacterium fabrum C58 0.46 Atu4532 shikimate 5-dehydrogenase 0.53 Atu3915 MerR family transcriptional regulator low > 89
Escherichia coli ECOR27 0.23 NOLOHH_17720 ydiB quinate/shikimate dehydrogenase 0.63 NOLOHH_05120 soxR redox-sensitive transcriptional activator SoxR low > 57
Escherichia coli ECRC62 0.23 BNILDI_16510 ydiB quinate/shikimate dehydrogenase 0.63 BNILDI_06405 soxR redox-sensitive transcriptional activator SoxR — —
Escherichia coli BL21 0.23 ECD_01661 quinate/shikimate 5-dehydrogenase, NAD(P)-binding 0.63 ECD_03935 redox-sensitive transcriptional activator of soxS; autorepressor — —
Escherichia coli ECRC101 0.23 OKFHMN_27200 ydiB quinate/shikimate dehydrogenase 0.63 OKFHMN_12870 soxR redox-sensitive transcriptional activator SoxR — —
Escherichia coli ECRC99 0.23 KEDOAH_00910 ydiB quinate/shikimate dehydrogenase 0.63 KEDOAH_15280 soxR redox-sensitive transcriptional activator SoxR — —
Escherichia coli ECRC101 0.23 MCAODC_18210 ydiB quinate/shikimate dehydrogenase 0.63 MCAODC_03380 soxR redox-sensitive transcriptional activator SoxR — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.23 OHPLBJKB_02032 Quinate/shikimate dehydrogenase 0.63 OHPLBJKB_03978 Redox-sensitive transcriptional activator SoxR low > 73
Escherichia coli Nissle 1917 0.23 ECOLIN_RS09455 quinate/shikimate dehydrogenase 0.63 ECOLIN_RS23510 redox-sensitive transcriptional activator SoxR low > 52
Escherichia coli ECRC102 0.23 NIAGMN_00865 ydiB quinate/shikimate dehydrogenase 0.63 NIAGMN_10715 soxR redox-sensitive transcriptional activator SoxR — —
Escherichia coli ECRC98 0.23 JDDGAC_01775 ydiB quinate/shikimate dehydrogenase 0.63 JDDGAC_16505 soxR redox-sensitive transcriptional activator SoxR — —
Escherichia coli BW25113 0.23 b1692 ydiB quinate/shikimate 5-dehydrogenase, NAD(P)-binding (NCBI) 0.63 b4063 soxR DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing (NCBI) low > 76
Escherichia fergusonii Becca 0.23 EFB2_02300 Quinate/shikimate dehydrogenase 0.63 EFB2_04528 Redox-sensitive transcriptional activator SoxR low > 86
Escherichia coli ECOR38 0.22 HEPCGN_05585 ydiB quinate/shikimate dehydrogenase 0.63 HEPCGN_11485 soxR redox-sensitive transcriptional activator SoxR low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.20 GFF3549 Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282) 0.62 GFF1442 Redox-sensitive transcriptional activator SoxR low > 78

Not shown: 18 genomes with orthologs for PP_2406 only; 13 genomes with orthologs for PP_2060 only