Conservation of cofitness between PP_4107 and PP_0567 in Pseudomonas putida KT2440

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4107 Transcriptional regulator, LysR family 1.0 PP_0567 Biosynthetic arginine decarboxylase 0.31 4
Pseudomonas simiae WCS417 0.75 PS417_23350 LysR family transcriptional regulator 0.95 PS417_03005 arginine decarboxylase low > 88
Pseudomonas fluorescens SBW25 0.75 PFLU_RS25165 LysR family transcriptional regulator 0.95 PFLU_RS03080 arginine decarboxylase low > 109
Pseudomonas fluorescens SBW25-INTG 0.75 PFLU_RS25165 LysR family transcriptional regulator 0.95 PFLU_RS03080 arginine decarboxylase low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_0596 transcriptional regulator, LysR family 0.95 Psyr_4381 arginine decarboxylase low > 86
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_0596 transcriptional regulator, LysR family 0.95 Psyr_4381 arginine decarboxylase low > 86
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_128 Transcriptional regulator, LysR family 0.96 PfGW456L13_43 Biosynthetic arginine decarboxylase (EC 4.1.1.19) low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.32 GFF4865 Glycine cleavage system transcriptional activator GcvA 0.41 GFF3040 Biosynthetic arginine decarboxylase (EC 4.1.1.19) low > 78
Escherichia coli ECRC101 0.32 OKFHMN_20120 gcvA glycine cleavage system transcriptional regulator GcvA 0.41 OKFHMN_19305 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECOR27 0.32 NOLOHH_12000 gcvA glycine cleavage system transcriptional regulator GcvA 0.41 NOLOHH_11175 speA biosynthetic arginine decarboxylase low > 57
Escherichia coli ECRC98 0.32 JDDGAC_23785 gcvA glycine cleavage system transcriptional regulator GcvA 0.41 JDDGAC_22935 speA biosynthetic arginine decarboxylase — —
Escherichia fergusonii Becca 0.32 EFB2_01109 Glycine cleavage system transcriptional activator 0.41 EFB2_00962 Biosynthetic arginine decarboxylase low > 86
Klebsiella michiganensis M5al 0.32 BWI76_RS22955 transcriptional regulator GcvA 0.40 BWI76_RS24030 arginine decarboxylase 0.20 66
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_00923 Glycine cleavage system transcriptional activator 0.41 OHPLBJKB_00778 Biosynthetic arginine decarboxylase low > 73
Escherichia coli ECRC101 0.32 MCAODC_10645 gcvA glycine cleavage system transcriptional regulator GcvA 0.41 MCAODC_09825 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECRC102 0.32 NIAGMN_17890 gcvA glycine cleavage system transcriptional regulator GcvA 0.41 NIAGMN_17070 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECRC62 0.32 BNILDI_10505 gcvA glycine cleavage system transcriptional regulator GcvA 0.41 BNILDI_09755 speA biosynthetic arginine decarboxylase — —
Serratia liquefaciens MT49 0.32 IAI46_20340 transcriptional regulator GcvA 0.41 IAI46_21140 biosynthetic arginine decarboxylase low > 86
Escherichia coli Nissle 1917 0.32 ECOLIN_RS15650 glycine cleavage system transcriptional regulator GcvA 0.41 ECOLIN_RS16350 biosynthetic arginine decarboxylase low > 52
Escherichia coli ECOR38 0.32 HEPCGN_19375 gcvA glycine cleavage system transcriptional regulator GcvA 0.41 HEPCGN_18610 speA biosynthetic arginine decarboxylase low > 85
Escherichia coli BW25113 0.32 b2808 gcvA DNA-binding transcriptional dual regulator (NCBI) 0.41 b2938 speA arginine decarboxylase (NCBI) low > 76
Escherichia coli ECRC99 0.32 KEDOAH_08010 gcvA glycine cleavage system transcriptional regulator GcvA 0.41 KEDOAH_08835 speA biosynthetic arginine decarboxylase — —
Escherichia coli BL21 0.32 ECD_02659 glycine cleavage system transcriptional activator; autorepressor 0.41 ECD_02768 biosynthetic arginine decarboxylase, PLP-binding low > 60
Dickeya dadantii 3937 0.31 DDA3937_RS05050 transcriptional regulator GcvA 0.41 DDA3937_RS18535 biosynthetic arginine decarboxylase low > 74
Enterobacter asburiae PDN3 0.31 EX28DRAFT_2883 Transcriptional regulator 0.40 EX28DRAFT_2978 arginine decarboxylase (EC 4.1.1.19) low > 76
Dickeya dianthicola ME23 0.31 DZA65_RS05390 transcriptional regulator GcvA 0.41 DZA65_RS19595 biosynthetic arginine decarboxylase low > 75
Dickeya dianthicola 67-19 0.31 HGI48_RS05050 transcriptional regulator GcvA 0.41 HGI48_RS18460 biosynthetic arginine decarboxylase low > 71
Rahnella sp. WP5 0.31 EX31_RS13110 transcriptional regulator GcvA 0.41 EX31_RS21355 biosynthetic arginine decarboxylase low > 89
Pectobacterium carotovorum WPP14 0.30 HER17_RS16415 transcriptional regulator GcvA 0.41 HER17_RS02665 biosynthetic arginine decarboxylase low > 75

Not shown: 4 genomes with orthologs for PP_4107 only; 33 genomes with orthologs for PP_0567 only