Conservation of cofitness between IAI46_24720 and IAI46_22725 in Serratia liquefaciens MT49

24 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Serratia liquefaciens MT49 1.0 IAI46_24720 divergent polysaccharide deacetylase family protein 1.0 IAI46_22725 RNase E specificity factor CsrD 0.52 13
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.63 GFF396 Possible divergent polysaccharide deacetylase 0.55 GFF2133 RNase E specificity factor CsrD low > 78
Pectobacterium carotovorum WPP14 0.63 HER17_RS20755 divergent polysaccharide deacetylase family protein 0.62 HER17_RS20175 RNase E specificity factor CsrD low > 75
Enterobacter asburiae PDN3 0.63 EX28DRAFT_3865 Uncharacterized protein conserved in bacteria 0.58 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain low > 76
Enterobacter sp. TBS_079 0.61 MPMX20_00119 hypothetical protein 0.58 MPMX20_04158 RNase E specificity factor CsrD low > 85
Klebsiella michiganensis M5al 0.60 BWI76_RS27240 hypothetical protein 0.57 BWI76_RS25505 RNase E specificity factor CsrD low > 92
Escherichia coli BW25113 0.60 b3614 yibQ orf, hypothetical protein (VIMSS) 0.57 b3252 yhdA conserved inner membrane protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_00085 hypothetical protein 0.57 OHPLBJKB_00453 RNase E specificity factor CsrD low > 73
Escherichia fergusonii Becca 0.60 EFB2_00196 hypothetical protein 0.57 EFB2_00579 RNase E specificity factor CsrD low > 86
Escherichia coli Nissle 1917 0.60 ECOLIN_RS20625 divergent polysaccharide deacetylase family protein 0.57 ECOLIN_RS18635 RNase E specificity factor CsrD low > 52
Escherichia coli ECOR27 0.60 NOLOHH_07605 yibQ Uncharacterized protein YibQ 0.57 NOLOHH_09505 csrD RNase E specificity factor CsrD low > 57
Escherichia coli BL21 0.60 ECD_03472 putative polysaccharide deacetylase 0.57 ECD_03111 targeting factor for csrBC sRNA degradation low > 60
Dickeya dianthicola ME23 0.60 DZA65_RS00830 divergent polysaccharide deacetylase family protein 0.61 DZA65_RS01405 RNase E specificity factor CsrD low > 75
Escherichia coli ECOR38 0.60 HEPCGN_14565 yibQ Uncharacterized protein YibQ 0.57 HEPCGN_16585 csrD RNase E specificity factor CsrD low > 85
Escherichia coli ECRC62 0.59 BNILDI_03910 yibQ Uncharacterized protein YibQ 0.57 BNILDI_02015 csrD RNase E specificity factor CsrD — —
Escherichia coli ECRC101 0.59 OKFHMN_15725 yibQ Uncharacterized protein YibQ 0.57 OKFHMN_17720 csrD RNase E specificity factor CsrD — —
Escherichia coli ECRC98 0.59 JDDGAC_19350 yibQ Uncharacterized protein YibQ 0.57 JDDGAC_21345 csrD RNase E specificity factor CsrD — —
Escherichia coli ECRC102 0.59 NIAGMN_13485 yibQ Uncharacterized protein YibQ 0.57 NIAGMN_15480 csrD RNase E specificity factor CsrD — —
Escherichia coli ECRC101 0.59 MCAODC_06235 yibQ Uncharacterized protein YibQ 0.57 MCAODC_08240 csrD RNase E specificity factor CsrD — —
Escherichia coli ECRC99 0.59 KEDOAH_12425 yibQ Uncharacterized protein YibQ 0.57 KEDOAH_10430 csrD RNase E specificity factor CsrD — —
Dickeya dianthicola 67-19 0.59 HGI48_RS00775 divergent polysaccharide deacetylase family protein 0.61 HGI48_RS01345 RNase E specificity factor CsrD low > 71
Rahnella sp. WP5 0.59 EX31_RS14370 divergent polysaccharide deacetylase family protein 0.61 EX31_RS12230 RNase E specificity factor CsrD low > 89
Dickeya dadantii 3937 0.59 DDA3937_RS20425 divergent polysaccharide deacetylase family protein 0.61 DDA3937_RS01425 RNase E specificity factor CsrD low > 74
Pantoea sp. MT58 0.56 IAI47_00715 divergent polysaccharide deacetylase family protein 0.50 IAI47_02430 RNase E specificity factor CsrD low > 76
Erwinia tracheiphila SCR3 0.55 LU632_RS21900 divergent polysaccharide deacetylase family protein 0.54 LU632_RS21455 csrD RNase E specificity factor CsrD low > 74

Not shown: 0 genomes with orthologs for IAI46_24720 only; 6 genomes with orthologs for IAI46_22725 only