Conservation of cofitness between HER17_RS12895 and HER17_RS20770 in Pectobacterium carotovorum WPP14

25 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS12895 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 1.0 HER17_RS20770 ADP-glyceromanno-heptose 6-epimerase 0.78 8
Serratia liquefaciens MT49 0.80 IAI46_17305 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.90 IAI46_24735 ADP-glyceromanno-heptose 6-epimerase — —
Erwinia tracheiphila SCR3 0.75 LU632_RS17465 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.87 LU632_RS21915 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Rahnella sp. WP5 0.74 EX31_RS19120 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.91 EX31_RS14395 ADP-glyceromanno-heptose 6-epimerase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF3761 Lipoprotein spr precursor 0.86 GFF392 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) low > 78
Dickeya dadantii 3937 0.72 DDA3937_RS09195 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.92 DDA3937_RS20440 ADP-glyceromanno-heptose 6-epimerase — —
Enterobacter sp. TBS_079 0.72 MPMX20_03141 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.87 MPMX20_00114 ADP-L-glycero-D-manno-heptose-6-epimerase — —
Dickeya dianthicola ME23 0.72 DZA65_RS09540 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.91 DZA65_RS00825 ADP-glyceromanno-heptose 6-epimerase — —
Dickeya dianthicola 67-19 0.72 HGI48_RS09235 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.91 HGI48_RS00770 ADP-glyceromanno-heptose 6-epimerase — —
Enterobacter asburiae PDN3 0.71 EX28DRAFT_0386 Cell wall-associated hydrolases (invasion-associated proteins) 0.87 EX28DRAFT_3871 ADP-L-glycero-D-manno-heptose-6-epimerase — —
Escherichia fergusonii Becca 0.71 EFB2_01681 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.87 EFB2_00192 ADP-L-glycero-D-manno-heptose-6-epimerase — —
Escherichia coli ECRC62 0.71 BNILDI_13895 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.86 BNILDI_03930 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Escherichia coli ECRC102 0.71 NIAGMN_21165 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.86 NIAGMN_13460 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Escherichia coli ECOR38 0.71 HEPCGN_22665 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.87 HEPCGN_14545 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Escherichia coli BL21 0.71 ECD_02105 murein DD-endopeptidase, space-maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD-carboxypeptidase 0.86 ECD_03476 ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding — —
Escherichia coli ECRC100 0.71 OKFHMN_23400 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.86 OKFHMN_15700 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Escherichia coli ECOR27 0.71 NOLOHH_14975 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.86 NOLOHH_07580 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Escherichia coli ECRC101 0.71 MCAODC_14450 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.86 MCAODC_06210 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_01534 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.87 OHPLBJKB_00081 ADP-L-glycero-D-manno-heptose-6-epimerase — —
Escherichia coli Nissle 1917 0.71 ECOLIN_RS12720 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.87 ECOLIN_RS20645 ADP-glyceromanno-heptose 6-epimerase low > 55
Escherichia coli ECRC99 0.71 KEDOAH_04785 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.86 KEDOAH_12450 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Escherichia coli BW25113 0.71 b2175 spr predicted peptidase, outer membrane lipoprotein (NCBI) 0.86 b3619 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) low > 76
Escherichia coli ECRC98 0.71 JDDGAC_27360 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.86 JDDGAC_19325 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Klebsiella michiganensis M5al 0.71 BWI76_RS19770 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.88 BWI76_RS27260 ADP-L-glycero-D-mannoheptose-6-epimerase — —
Pantoea sp. MT58 0.67 IAI47_06625 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.85 IAI47_00690 ADP-glyceromanno-heptose 6-epimerase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_16170 hypothetical protein 0.31 CA264_01380 ADP-L-glycero-D-mannoheptose-6-epimerase — —

Not shown: 9 genomes with orthologs for HER17_RS12895 only; 26 genomes with orthologs for HER17_RS20770 only