Conservation of cofitness between HER17_RS15240 and HER17_RS12200 in Pectobacterium carotovorum WPP14

23 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 1.0 HER17_RS12200 response regulator 0.59 7
Dickeya dianthicola ME23 0.98 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.79 DZA65_RS10080 response regulator low > 75
Dickeya dadantii 3937 0.98 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.79 DDA3937_RS09755 response regulator — —
Dickeya dianthicola 67-19 0.97 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.79 HGI48_RS09770 response regulator — —
Serratia liquefaciens MT49 0.95 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.62 IAI46_19945 response regulator low > 86
Rahnella sp. WP5 0.95 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.65 EX31_RS17765 response regulator low > 89
Enterobacter asburiae PDN3 0.91 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH 0.60 EX28DRAFT_3011 Response regulator of citrate/malate metabolism — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF4549 LSU m3Psi1915 methyltransferase RlmH 0.38 GFF1132 Transcriptional regulatory protein CitB, DpiA low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.90 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H 0.35 OHPLBJKB_03085 Transcriptional regulatory protein DpiA — —
Escherichia coli BL21 0.90 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent 0.35 ECD_00590 response regulator in two-component regulatory system with CitA — —
Enterobacter sp. TBS_079 0.90 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H 0.60 MPMX20_03831 Transcriptional regulatory protein CitB low > 85
Escherichia coli Nissle 1917 0.90 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 ECOLIN_RS03385 two-component response regulator DpiA — —
Escherichia coli BW25113 0.90 b0636 ybeA hypothetical protein (NCBI) 0.35 b0620 citB DNA-binding response regulator in two-component regulatory system with citA (NCBI) low > 76
Klebsiella michiganensis M5al 0.90 BWI76_RS08040 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.59 BWI76_RS04545 two-component response regulator for citrate low > 92
Escherichia coli ECRC100 0.90 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 OKFHMN_07435 dpiA two-component response regulator DpiA low > 80
Escherichia coli ECRC102 0.90 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 NIAGMN_05490 dpiA two-component response regulator DpiA — —
Escherichia fergusonii Becca 0.90 EFB2_03456 Ribosomal RNA large subunit methyltransferase H 0.35 EFB2_03471 Transcriptional regulatory protein DpiA low > 86
Escherichia coli ECRC101 0.90 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 MCAODC_26650 dpiA two-component response regulator DpiA low > 87
Escherichia coli ECRC62 0.90 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 BNILDI_21820 dpiA two-component response regulator DpiA — —
Escherichia coli ECOR38 0.90 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 HEPCGN_00840 dpiA two-component response regulator DpiA low > 87
Escherichia coli ECRC98 0.90 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 JDDGAC_11080 dpiA two-component response regulator DpiA — —
Escherichia coli ECRC99 0.90 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 KEDOAH_20535 dpiA two-component response regulator DpiA — —
Escherichia coli ECOR27 0.90 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 NOLOHH_23810 dpiA two-component response regulator DpiA low > 75
Vibrio cholerae E7946 ATCC 55056 0.83 CSW01_04865 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 CSW01_04085 response regulator low > 62

Not shown: 73 genomes with orthologs for HER17_RS15240 only; 0 genomes with orthologs for HER17_RS12200 only