Conservation of cofitness between HER17_RS12895 and HER17_RS09245 in Pectobacterium carotovorum WPP14

24 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS12895 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 1.0 HER17_RS09245 NlpC/P60 family protein 0.78 10
Serratia liquefaciens MT49 0.80 IAI46_17305 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.50 IAI46_11255 C40 family peptidase low > 86
Erwinia tracheiphila SCR3 0.75 LU632_RS17465 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.45 LU632_RS11195 C40 family peptidase 0.74 66
Rahnella sp. WP5 0.74 EX31_RS19120 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.49 EX31_RS13825 C40 family peptidase low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF3761 Lipoprotein spr precursor 0.42 GFF3620 FIG00545237: hypothetical protein low > 78
Dickeya dadantii 3937 0.72 DDA3937_RS09195 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.51 DDA3937_RS12615 C40 family peptidase low > 74
Enterobacter sp. TBS_079 0.72 MPMX20_03141 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.43 MPMX20_01982 Murein DD-endopeptidase MepH low > 85
Dickeya dianthicola ME23 0.72 DZA65_RS09540 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.52 DZA65_RS13130 C40 family peptidase low > 75
Dickeya dianthicola 67-19 0.72 HGI48_RS09235 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.51 HGI48_RS12675 C40 family peptidase low > 71
Enterobacter asburiae PDN3 0.71 EX28DRAFT_0386 Cell wall-associated hydrolases (invasion-associated proteins) 0.47 EX28DRAFT_1652 Cell wall-associated hydrolases (invasion-associated proteins) low > 76
Escherichia coli ECRC102 0.71 NIAGMN_21165 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.44 NIAGMN_00655 mepH peptidoglycan DD-endopeptidase MepH — —
Escherichia coli ECOR27 0.71 NOLOHH_14975 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.44 NOLOHH_17930 mepH Murein DD-endopeptidase MepH low > 75
Escherichia coli BL21 0.71 ECD_02105 murein DD-endopeptidase, space-maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD-carboxypeptidase 0.44 ECD_01625 murein DD-endopeptidase, space-maker hydrolase low > 61
Escherichia coli ECRC101 0.71 MCAODC_14450 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.43 MCAODC_18000 mepH peptidoglycan DD-endopeptidase MepH low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_01534 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.44 OHPLBJKB_02070 Murein DD-endopeptidase MepH low > 73
Escherichia coli ECOR38 0.71 HEPCGN_22665 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.44 HEPCGN_05795 mepH peptidoglycan DD-endopeptidase MepH low > 87
Escherichia coli Nissle 1917 0.71 ECOLIN_RS12720 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.45 ECOLIN_RS09225 peptidoglycan DD-endopeptidase MepH — —
Escherichia coli ECRC62 0.71 BNILDI_13895 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.44 BNILDI_16720 mepH peptidoglycan DD-endopeptidase MepH low > 75
Escherichia fergusonii Becca 0.71 EFB2_01681 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.45 EFB2_02338 Murein DD-endopeptidase MepH low > 86
Escherichia coli BW25113 0.71 b2175 spr predicted peptidase, outer membrane lipoprotein (NCBI) 0.44 b1655 ydhO predicted lipoprotein (NCBI) — —
Escherichia coli ECRC99 0.71 KEDOAH_04785 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.43 KEDOAH_00700 mepH peptidoglycan DD-endopeptidase MepH — —
Escherichia coli ECRC98 0.71 JDDGAC_27360 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.43 JDDGAC_02000 mepH peptidoglycan DD-endopeptidase MepH low > 86
Escherichia coli ECRC100 0.71 OKFHMN_23400 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.43 OKFHMN_27410 mepH peptidoglycan DD-endopeptidase MepH low > 80
Klebsiella michiganensis M5al 0.71 BWI76_RS19770 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.47 BWI76_RS16495 endopeptidase low > 92
Pantoea sp. MT58 0.67 IAI47_06625 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.48 IAI47_10785 C40 family peptidase 0.62 14

Not shown: 10 genomes with orthologs for HER17_RS12895 only; 0 genomes with orthologs for HER17_RS09245 only