Conservation of cofitness between HER17_RS12165 and HER17_RS06280 in Pectobacterium carotovorum WPP14

24 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS12165 citrate lyase subunit alpha 1.0 HER17_RS06280 tRNA 5-hydroxyuridine modification protein YegQ 0.82 3
Dickeya dadantii 3937 0.88 DDA3937_RS09790 citrate lyase subunit alpha 0.90 DDA3937_RS15295 tRNA 5-hydroxyuridine modification protein YegQ — —
Dickeya dianthicola ME23 0.87 DZA65_RS10115 citrate lyase subunit alpha 0.88 DZA65_RS16195 tRNA 5-hydroxyuridine modification protein YegQ low > 75
Dickeya dianthicola 67-19 0.87 HGI48_RS09805 citrate lyase subunit alpha 0.88 HGI48_RS15375 tRNA 5-hydroxyuridine modification protein YegQ low > 71
Enterobacter asburiae PDN3 0.80 EX28DRAFT_3004 citrate lyase, alpha subunit 0.83 EX28DRAFT_0478 Collagenase and related proteases low > 76
Enterobacter sp. TBS_079 0.80 MPMX20_03824 Citrate lyase alpha chain 0.83 MPMX20_03067 23S rRNA 5-hydroxycytidine synthase low > 85
Rahnella sp. WP5 0.78 EX31_RS17800 citrate lyase subunit alpha 0.87 EX31_RS20325 tRNA 5-hydroxyuridine modification protein YegQ low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF219 Citrate lyase alpha chain (EC 4.1.3.6) 0.84 GFF3846 Putative protease low > 78
Klebsiella michiganensis M5al 0.68 BWI76_RS04450 citrate lyase subunit alpha 0.85 BWI76_RS19280 U32 family peptidase 0.15 91
Escherichia coli ECOR27 0.66 NOLOHH_23835 citF citrate lyase subunit alpha 0.83 NOLOHH_15500 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_03090 Citrate lyase alpha chain 0.83 OHPLBJKB_01623 putative protease YdcP low > 73
Escherichia coli ECRC62 0.66 BNILDI_21845 citF citrate lyase subunit alpha 0.83 BNILDI_14415 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 75
Escherichia coli BL21 0.66 ECD_00583 citrate lyase, citrate-ACP transferase (alpha) subunit 0.83 ECD_01986 putative peptidase low > 61
Escherichia coli BW25113 0.66 b0615 citF citrate lyase, citrate-ACP transferase (alpha) subunit (NCBI) 0.83 b2081 yegQ predicted peptidase (NCBI) low > 76
Escherichia coli Nissle 1917 0.66 ECOLIN_RS03360 citrate lyase subunit alpha 0.83 ECOLIN_RS12250 tRNA 5-hydroxyuridine modification protein YegQ — —
Escherichia fergusonii Becca 0.66 EFB2_03476 Citrate lyase alpha chain 0.83 EFB2_01770 23S rRNA 5-hydroxycytidine synthase low > 86
Escherichia coli ECOR38 0.66 HEPCGN_00815 citF citrate lyase subunit alpha 0.83 HEPCGN_02845 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 87
Escherichia coli ECRC101 0.66 MCAODC_26675 citF citrate lyase subunit alpha 0.83 MCAODC_20775 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 87
Escherichia coli ECRC100 0.66 OKFHMN_07460 citF citrate lyase subunit alpha 0.83 OKFHMN_24165 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 80
Escherichia coli ECRC102 0.66 NIAGMN_05515 citF citrate lyase subunit alpha 0.83 NIAGMN_22110 yegQ tRNA 5-hydroxyuridine modification protein YegQ — —
Escherichia coli ECRC99 0.66 KEDOAH_20510 citF citrate lyase subunit alpha 0.83 KEDOAH_03985 yegQ tRNA 5-hydroxyuridine modification protein YegQ — —
Escherichia coli ECRC98 0.66 JDDGAC_11105 citF citrate lyase subunit alpha 0.83 JDDGAC_28275 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 86
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_04130 citrate lyase subunit alpha 0.75 CSW01_03750 U32 family peptidase low > 62
Serratia liquefaciens MT49 0.63 IAI46_16990 citrate lyase subunit alpha 0.87 IAI46_19015 tRNA 5-hydroxyuridine modification protein YegQ low > 86
Fusobacterium nucleatum SB010 0.51 HUW76_08615 citrate lyase subunit alpha 0.32 HUW76_02115 U32 family peptidase low > 35

Not shown: 2 genomes with orthologs for HER17_RS12165 only; 28 genomes with orthologs for HER17_RS06280 only