Conservation of cofitness between HER17_RS06010 and HER17_RS04655 in Pectobacterium carotovorum WPP14

24 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS06010 Fe-S cluster assembly transcriptional regulator IscR 1.0 HER17_RS04655 peptidoglycan meso-diaminopimelic acid protein amidase 0.72 6
Dickeya dadantii 3937 0.95 DDA3937_RS15550 Fe-S cluster assembly transcriptional regulator IscR 0.73 DDA3937_RS16580 murein L,D-transpeptidase — —
Dickeya dianthicola ME23 0.94 DZA65_RS16725 Fe-S cluster assembly transcriptional regulator IscR 0.72 DZA65_RS17740 murein L,D-transpeptidase low > 75
Dickeya dianthicola 67-19 0.94 HGI48_RS15650 Fe-S cluster assembly transcriptional regulator IscR 0.72 HGI48_RS16650 murein L,D-transpeptidase — —
Serratia liquefaciens MT49 0.92 IAI46_19360 Fe-S cluster assembly transcriptional regulator IscR 0.69 IAI46_04350 murein L,D-transpeptidase low > 86
Rahnella sp. WP5 0.88 EX31_RS20550 Fe-S cluster assembly transcriptional regulator IscR 0.59 EX31_RS21010 murein L,D-transpeptidase low > 89
Erwinia tracheiphila SCR3 0.86 LU632_RS17875 iscR Fe-S cluster assembly transcriptional regulator IscR 0.66 LU632_RS01145 dpaA peptidoglycan meso-diaminopimelic acid protein amidase low > 74
Pantoea sp. MT58 0.82 IAI47_05000 Fe-S cluster assembly transcriptional regulator IscR 0.65 IAI47_15180 murein L,D-transpeptidase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF2436 Iron-sulfur cluster regulator IscR 0.57 GFF4103 probable exported protein STY0357 low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_01178 HTH-type transcriptional regulator IscR 0.58 OHPLBJKB_03415 hypothetical protein low > 73
Enterobacter sp. TBS_079 0.71 MPMX20_03412 HTH-type transcriptional regulator IscR 0.58 MPMX20_00913 hypothetical protein low > 85
Enterobacter asburiae PDN3 0.71 EX28DRAFT_0108 transcriptional regulator, BadM/Rrf2 family 0.58 EX28DRAFT_2665 Uncharacterized protein conserved in bacteria low > 76
Escherichia coli ECRC62 0.71 BNILDI_12085 iscR Fe-S cluster assembly transcriptional regulator IscR 0.58 BNILDI_00330 dpaA peptidoglycan meso-diaminopimelic acid protein amidase low > 75
Escherichia coli Nissle 1917 0.71 ECOLIN_RS14370 Fe-S cluster assembly transcriptional regulator IscR 0.58 ECOLIN_RS01760 peptidoglycan meso-diaminopimelic acid protein amidase 0.70 7
Escherichia coli ECRC102 0.71 NIAGMN_19385 iscR Fe-S cluster assembly transcriptional regulator IscR 0.58 NIAGMN_07625 dpaA peptidoglycan meso-diaminopimelic acid protein amidase — —
Escherichia coli ECOR27 0.71 NOLOHH_13285 iscR Fe-S cluster assembly transcriptional regulator IscR 0.58 NOLOHH_02135 dpaA peptidoglycan meso-diaminopimelic acid protein amidase low > 75
Escherichia coli BW25113 0.71 b2531 iscR DNA-binding transcriptional repressor (NCBI) 0.58 b0224 yafK hypothetical protein (NCBI) low > 76
Escherichia coli ECOR38 0.71 HEPCGN_20755 iscR Fe-S cluster assembly transcriptional regulator IscR 0.58 HEPCGN_07870 dpaA peptidoglycan meso-diaminopimelic acid protein amidase low > 87
Escherichia coli BL21 0.71 ECD_02423 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor 0.58 ECD_00219 L,D-transpeptidase-related protein low > 61
Escherichia coli ECRC98 0.71 JDDGAC_25290 iscR Fe-S cluster assembly transcriptional regulator IscR 0.58 JDDGAC_13390 dpaA peptidoglycan meso-diaminopimelic acid protein amidase low > 86
Escherichia fergusonii Becca 0.71 EFB2_01359 HTH-type transcriptional regulator IscR 0.58 EFB2_03793 hypothetical protein low > 86
Escherichia coli ECRC99 0.71 KEDOAH_06605 iscR Fe-S cluster assembly transcriptional regulator IscR 0.58 KEDOAH_18390 dpaA peptidoglycan meso-diaminopimelic acid protein amidase — —
Escherichia coli ECRC100 0.71 OKFHMN_21615 iscR Fe-S cluster assembly transcriptional regulator IscR 0.58 OKFHMN_09765 dpaA peptidoglycan meso-diaminopimelic acid protein amidase low > 80
Escherichia coli ECRC101 0.71 MCAODC_12145 iscR Fe-S cluster assembly transcriptional regulator IscR 0.58 MCAODC_00285 dpaA peptidoglycan meso-diaminopimelic acid protein amidase low > 87
Klebsiella michiganensis M5al 0.70 BWI76_RS21165 Fe-S cluster assembly transcriptional regulator IscR 0.57 BWI76_RS05485 transpeptidase low > 92

Not shown: 38 genomes with orthologs for HER17_RS06010 only; 0 genomes with orthologs for HER17_RS04655 only