Conservation of cofitness between HER17_RS12475 and HER17_RS03705 in Pectobacterium carotovorum WPP14

24 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS12475 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 1.0 HER17_RS03705 LysR family transcriptional regulator 0.72 1
Dickeya dianthicola 67-19 0.79 HGI48_RS09505 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.81 HGI48_RS17490 LysR family transcriptional regulator low > 71
Dickeya dadantii 3937 0.79 DDA3937_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.81 DDA3937_RS17430 LysR family transcriptional regulator low > 74
Dickeya dianthicola ME23 0.78 DZA65_RS09815 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.81 DZA65_RS18555 LysR family transcriptional regulator low > 75
Serratia liquefaciens MT49 0.78 IAI46_08395 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.78 IAI46_20525 LysR family transcriptional regulator low > 86
Rahnella sp. WP5 0.75 EX31_RS09605 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.77 EX31_RS13280 LysR family transcriptional regulator low > 89
Pantoea sp. MT58 0.74 IAI47_13020 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.71 IAI47_03855 LysR family transcriptional regulator low > 76
Escherichia coli ECRC62 0.73 BNILDI_20560 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 BNILDI_10305 lysR DNA-binding transcriptional regulator LysR low > 75
Enterobacter sp. TBS_079 0.73 MPMX20_01500 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.73 MPMX20_03706 Octopine catabolism/uptake operon regulatory protein OccR low > 85
Escherichia coli BL21 0.73 ECD_00864 23S rRNA m(5)U747 methyltransferase, SAM-dependent 0.72 ECD_02687 transcriptional activator of lysA; autorepressor low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_02809 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 OHPLBJKB_00890 Octopine catabolism/uptake operon regulatory protein OccR low > 73
Escherichia coli ECRC99 0.73 KEDOAH_21975 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 KEDOAH_08190 lysR DNA-binding transcriptional regulator LysR — —
Escherichia coli ECOR38 0.73 HEPCGN_02095 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 HEPCGN_19570 lysR DNA-binding transcriptional regulator LysR low > 87
Escherichia coli Nissle 1917 0.73 ECOLIN_RS04575 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 ECOLIN_RS15935 DNA-binding transcriptional regulator LysR low > 55
Escherichia coli ECRC100 0.73 OKFHMN_05935 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 OKFHMN_19940 lysR DNA-binding transcriptional regulator LysR low > 80
Escherichia coli ECRC102 0.73 NIAGMN_03980 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 NIAGMN_17710 lysR DNA-binding transcriptional regulator LysR — —
Escherichia coli ECRC101 0.73 MCAODC_25150 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 MCAODC_10465 lysR DNA-binding transcriptional regulator LysR low > 87
Escherichia fergusonii Becca 0.73 EFB2_03202 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 EFB2_01044 Octopine catabolism/uptake operon regulatory protein OccR low > 86
Enterobacter asburiae PDN3 0.72 EX28DRAFT_2094 23S rRNA (uracil-5-)-methyltransferase RumB 0.70 EX28DRAFT_2917 Transcriptional regulator low > 76
Escherichia coli ECRC98 0.72 JDDGAC_09570 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 JDDGAC_23605 lysR DNA-binding transcriptional regulator LysR low > 86
Escherichia coli BW25113 0.72 b0859 rumB 23S rRNA m(5)U747-methyltransferase (NCBI) 0.72 b2839 lysR DNA-binding transcriptional dual regulator (NCBI) low > 76
Escherichia coli ECOR27 0.72 NOLOHH_22305 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 NOLOHH_11825 lysR DNA-binding transcriptional regulator LysR low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF763 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) 0.71 GFF1324 Transcriptional activator protein LysR low > 78
Klebsiella michiganensis M5al 0.70 BWI76_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase 0.69 BWI76_RS23365 LysR family transcriptional regulator low > 92
Erwinia tracheiphila SCR3 0.65 LU632_RS09660 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.67 LU632_RS06035 LysR family transcriptional regulator low > 74

Not shown: 5 genomes with orthologs for HER17_RS12475 only; 26 genomes with orthologs for HER17_RS03705 only