Conservation of cofitness between HEPCGN_13260 and HEPCGN_23865 in Escherichia coli ECOR38

24 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECOR38 1.0 HEPCGN_13260 rffC dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase 1.0 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.97 6
Escherichia coli BL21 1.00 ECD_03668 TDP-fucosamine acetyltransferase 1.00 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase low > 61
Escherichia coli ECRC98 1.00 JDDGAC_18175 rffC dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase 1.00 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Escherichia coli BW25113 1.00 b3790 rffC TDP-fucosamine acetyltransferase (RefSeq) 1.00 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) low > 76
Escherichia coli ECRC99 1.00 KEDOAH_13600 rffC dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase 1.00 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC
Escherichia coli ECRC102 1.00 NIAGMN_12305 rffC dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase 1.00 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04264 dTDP-fucosamine acetyltransferase 1.00 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C low > 73
Escherichia coli ECRC100 1.00 OKFHMN_14550 rffC dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase 1.00 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.82 45
Escherichia coli ECRC101 1.00 MCAODC_05055 rffC dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase 1.00 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 87
Escherichia fergusonii Becca 0.99 EFB2_04849 dTDP-fucosamine acetyltransferase 1.00 EFB2_02889 Ribosomal large subunit pseudouridine synthase C low > 86
Escherichia coli Nissle 1917 0.99 ECOLIN_RS21755 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase 1.00 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC
Escherichia coli ECRC62 0.99 BNILDI_04840 rffC dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase 1.00 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Escherichia coli ECOR27 0.98 NOLOHH_06685 rffC dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase 1.00 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.75 37
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.79 GFF2883 Lipopolysaccharide biosynthesis protein RffC 0.98 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70)
Klebsiella michiganensis M5al 0.74 BWI76_RS01110 TDP-fucosamine acetyltransferase 0.93 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase low > 92
Enterobacter asburiae PDN3 0.66 EX28DRAFT_4458 TDP-D-fucosamine acetyltransferase 0.92 EX28DRAFT_1844 pseudouridine synthase, RluA family
Enterobacter sp. TBS_079 0.65 MPMX20_04485 dTDP-fucosamine acetyltransferase 0.89 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C low > 85
Pectobacterium carotovorum WPP14 0.53 HER17_RS01170 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase 0.81 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Pantoea sp. MT58 0.50 IAI47_18490 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase 0.85 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.39 76
Erwinia tracheiphila SCR3 0.46 LU632_RS24230 rffC dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase 0.85 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Dickeya dianthicola ME23 0.45 DZA65_RS21235 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase 0.80 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Serratia liquefaciens MT49 0.45 IAI46_00620 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase 0.80 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Dickeya dianthicola 67-19 0.44 HGI48_RS20190 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase 0.80 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 71
Dickeya dadantii 3937 0.44 DDA3937_RS20045 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase 0.80 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Rahnella sp. WP5 0.43 EX31_RS15075 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase 0.82 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 89

Not shown: 0 genomes with orthologs for HEPCGN_13260 only; 57 genomes with orthologs for HEPCGN_23865 only