Conservation of cofitness between ECD_02877 and ECD_03243 in Escherichia coli BL21

27 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02877 UPF0114 family putative inner membrane protein 1.0 ECD_03243 DNA catabolic putative fimbrial transporter 0.61 18
Escherichia fergusonii Becca 1.00 EFB2_00806 hypothetical protein 0.95 EFB2_00437 Type IV pilus biogenesis and competence protein PilQ low > 86
Escherichia coli Nissle 1917 1.00 ECOLIN_RS17290 TIGR00645 family protein 0.98 ECOLIN_RS19370 DNA uptake porin HofQ low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00697 hypothetical protein 0.97 OHPLBJKB_00312 Type IV pilus biogenesis and competence protein PilQ low > 73
Escherichia coli ECRC98 1.00 JDDGAC_22620 yqhA UPF0114 protein YqhA 0.97 JDDGAC_20735 hofQ DNA uptake porin HofQ low > 86
Escherichia coli ECRC102 1.00 NIAGMN_16750 yqhA UPF0114 protein YqhA 0.97 NIAGMN_14875 hofQ DNA uptake porin HofQ — —
Escherichia coli BW25113 1.00 b3002 yqhA hypothetical protein (NCBI) 1.00 b3391 hofQ predicted fimbrial transporter (NCBI) low > 76
Escherichia coli ECRC99 1.00 KEDOAH_09160 yqhA UPF0114 protein YqhA 0.97 KEDOAH_11035 hofQ DNA uptake porin HofQ — —
Escherichia coli ECOR38 1.00 HEPCGN_17845 yqhA UPF0114 protein YqhA 0.96 HEPCGN_15925 hofQ DNA uptake porin HofQ low > 87
Escherichia coli ECOR27 1.00 NOLOHH_10760 yqhA UPF0114 protein YqhA 0.98 NOLOHH_08895 hofQ DNA uptake porin HofQ low > 75
Escherichia coli ECRC62 1.00 BNILDI_00755 yqhA UPF0114 protein YqhA 0.97 BNILDI_02625 hofQ DNA uptake porin HofQ low > 75
Escherichia coli ECRC100 1.00 OKFHMN_18985 yqhA UPF0114 protein YqhA 0.97 OKFHMN_17105 hofQ DNA uptake porin HofQ low > 80
Escherichia coli ECRC101 1.00 MCAODC_09500 yqhA UPF0114 protein YqhA 0.97 MCAODC_07635 hofQ DNA uptake porin HofQ low > 87
Enterobacter sp. TBS_079 0.91 MPMX20_03846 hypothetical protein 0.72 MPMX20_04280 Type IV pilus biogenesis and competence protein PilQ low > 85
Klebsiella michiganensis M5al 0.91 BWI76_RS24270 membrane protein 0.67 BWI76_RS26100 DNA transporter HofQ low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF3112 Putative membrane protein 0.81 GFF628 Type IV pilus biogenesis protein PilQ low > 78
Enterobacter asburiae PDN3 0.90 EX28DRAFT_3040 TIGR00645 family protein 0.73 EX28DRAFT_4151 type IV pilus secretin (or competence protein) PilQ low > 76
Serratia liquefaciens MT49 0.89 IAI46_12210 TIGR00645 family protein 0.46 IAI46_23715 DNA uptake porin HofQ low > 86
Dickeya dadantii 3937 0.85 DDA3937_RS04680 TIGR00645 family protein 0.48 DDA3937_RS19555 DNA uptake porin HofQ low > 74
Dickeya dianthicola ME23 0.84 DZA65_RS04555 TIGR00645 family protein 0.48 DZA65_RS20770 DNA uptake porin HofQ low > 75
Dickeya dianthicola 67-19 0.84 HGI48_RS04635 TIGR00645 family protein 0.48 HGI48_RS19685 DNA uptake porin HofQ low > 71
Erwinia tracheiphila SCR3 0.84 LU632_RS00860 TIGR00645 family protein 0.49 LU632_RS22875 hofQ DNA uptake porin HofQ low > 74
Pectobacterium carotovorum WPP14 0.80 HER17_RS19160 TIGR00645 family protein 0.49 HER17_RS01770 DNA uptake porin HofQ low > 75
Pantoea sp. MT58 0.79 IAI47_01255 TIGR00645 family protein 0.49 IAI47_01885 DNA uptake porin HofQ low > 76
Pseudomonas putida KT2440 0.79 PP_0682 conserved inner membrane protein of unknown function, UPF0114 family 0.27 PP_5080 type 4 pili biogenesis protein low > 96
Pseudomonas simiae WCS417 0.79 PS417_24215 hypothetical protein 0.24 PS417_01975 pilus assembly protein PilQ — —
Pseudomonas fluorescens SBW25-INTG 0.79 PFLU_RS26135 TIGR00645 family protein 0.25 PFLU_RS02020 type IV pilus secretin PilQ family protein low > 109
Pseudomonas fluorescens SBW25 0.79 PFLU_RS26135 TIGR00645 family protein 0.25 PFLU_RS02020 type IV pilus secretin PilQ family protein low > 109

Not shown: 40 genomes with orthologs for ECD_02877 only; 2 genomes with orthologs for ECD_03243 only