Conservation of cofitness between ECD_03243 and ECD_03134 in Escherichia coli BL21

24 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03243 DNA catabolic putative fimbrial transporter 1.0 ECD_03134 ssDNA-binding protein, function unknown 0.61 34
Escherichia coli BW25113 1.00 b3391 hofQ predicted fimbrial transporter (NCBI) 1.00 b3283 yrdD predicted DNA topoisomerase (NCBI) low > 76
Escherichia coli Nissle 1917 0.98 ECOLIN_RS19370 DNA uptake porin HofQ 0.99 ECOLIN_RS18850 type I DNA topoisomerase low > 55
Escherichia coli ECOR27 0.98 NOLOHH_08895 hofQ DNA uptake porin HofQ 0.99 NOLOHH_09345 yrdD Uncharacterized protein YrdD low > 75
Escherichia coli ECRC62 0.97 BNILDI_02625 hofQ DNA uptake porin HofQ 0.99 BNILDI_02175 yrdD Uncharacterized protein YrdD low > 75
Escherichia coli ECRC102 0.97 NIAGMN_14875 hofQ DNA uptake porin HofQ 1.00 NIAGMN_15315 yrdD Uncharacterized protein YrdD — —
Escherichia coli ECRC100 0.97 OKFHMN_17105 hofQ DNA uptake porin HofQ 1.00 OKFHMN_17555 yrdD Uncharacterized protein YrdD low > 80
Escherichia coli ECRC98 0.97 JDDGAC_20735 hofQ DNA uptake porin HofQ 1.00 JDDGAC_21175 yrdD Uncharacterized protein YrdD low > 86
Escherichia coli ECRC101 0.97 MCAODC_07635 hofQ DNA uptake porin HofQ 1.00 MCAODC_08075 yrdD Uncharacterized protein YrdD low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.97 OHPLBJKB_00312 Type IV pilus biogenesis and competence protein PilQ 1.00 OHPLBJKB_00420 DNA topoisomerase 1 low > 73
Escherichia coli ECRC99 0.97 KEDOAH_11035 hofQ DNA uptake porin HofQ 1.00 KEDOAH_10595 yrdD Uncharacterized protein YrdD — —
Escherichia coli ECOR38 0.96 HEPCGN_15925 hofQ DNA uptake porin HofQ 0.99 HEPCGN_16375 yrdD Uncharacterized protein YrdD low > 87
Escherichia fergusonii Becca 0.95 EFB2_00437 Type IV pilus biogenesis and competence protein PilQ 0.99 EFB2_00540 DNA topoisomerase 1 low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.81 GFF628 Type IV pilus biogenesis protein PilQ 0.87 GFF2395 Similar to C-terminal Zn-finger domain of DNA topoisomerase I low > 78
Enterobacter asburiae PDN3 0.73 EX28DRAFT_4151 type IV pilus secretin (or competence protein) PilQ 0.85 EX28DRAFT_0044 Zn-finger domain associated with topoisomerase type I low > 76
Enterobacter sp. TBS_079 0.72 MPMX20_04280 Type IV pilus biogenesis and competence protein PilQ 0.84 MPMX20_04191 DNA topoisomerase 1 low > 85
Klebsiella michiganensis M5al 0.67 BWI76_RS26100 DNA transporter HofQ 0.88 BWI76_RS25655 DNA topoisomerase type IA zn finger domain-containing protein low > 92
Pectobacterium carotovorum WPP14 0.49 HER17_RS01770 DNA uptake porin HofQ 0.77 HER17_RS02240 topoisomerase DNA-binding C4 zinc finger domain-containing protein low > 75
Pantoea sp. MT58 0.49 IAI47_01885 DNA uptake porin HofQ 0.78 IAI47_02305 topoisomerase DNA-binding C4 zinc finger domain-containing protein low > 76
Erwinia tracheiphila SCR3 0.49 LU632_RS22875 hofQ DNA uptake porin HofQ 0.73 LU632_RS22455 topoisomerase DNA-binding C4 zinc finger domain-containing protein low > 74
Dickeya dianthicola 67-19 0.48 HGI48_RS19685 DNA uptake porin HofQ 0.74 HGI48_RS19200 topoisomerase DNA-binding C4 zinc finger domain-containing protein low > 71
Dickeya dianthicola ME23 0.48 DZA65_RS20770 DNA uptake porin HofQ 0.74 DZA65_RS20325 hypothetical protein low > 75
Dickeya dadantii 3937 0.48 DDA3937_RS19555 DNA uptake porin HofQ 0.75 DDA3937_RS22495 topoisomerase DNA-binding C4 zinc finger domain-containing protein low > 74
Rahnella sp. WP5 0.47 EX31_RS04730 DNA uptake porin HofQ 0.76 EX31_RS15960 hypothetical protein low > 89
Serratia liquefaciens MT49 0.46 IAI46_23715 DNA uptake porin HofQ 0.75 IAI46_23250 topoisomerase DNA-binding C4 zinc finger domain-containing protein low > 86

Not shown: 5 genomes with orthologs for ECD_03243 only; 6 genomes with orthologs for ECD_03134 only