Conservation of cofitness between ECD_00067 and ECD_01082 in Escherichia coli BL21

24 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00067 DedA family inner membrane protein 1.0 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase 0.74 7
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03593 Inner membrane protein YabI 1.00 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C low > 73
Escherichia coli ECOR38 1.00 HEPCGN_08750 yabI Inner membrane protein YabI 1.00 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 85
Escherichia coli Nissle 1917 1.00 ECOLIN_RS00355 DedA family protein 1.00 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 52
Escherichia coli ECRC101 1.00 OKFHMN_10770 yabI Inner membrane protein YabI 1.00 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli BW25113 1.00 b0065 yabI conserved inner membrane protein (NCBI) 1.00 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) low > 76
Escherichia coli ECRC99 1.00 KEDOAH_17385 yabI Inner membrane protein YabI 1.00 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli ECRC98 1.00 JDDGAC_14365 yabI Inner membrane protein YabI 1.00 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli ECRC102 1.00 NIAGMN_08620 yabI Inner membrane protein YabI 1.00 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli ECRC101 1.00 MCAODC_01285 yabI Inner membrane protein YabI 1.00 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli ECRC62 0.99 BNILDI_08495 yabI Inner membrane protein YabI 1.00 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli ECOR27 0.99 NOLOHH_03115 yabI Inner membrane protein YabI 1.00 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 57
Escherichia fergusonii Becca 0.98 EFB2_03980 Inner membrane protein YabI 1.00 EFB2_02889 Ribosomal large subunit pseudouridine synthase C low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.87 GFF175 DedA family inner membrane protein YabI 0.98 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 78
Enterobacter asburiae PDN3 0.84 EX28DRAFT_3657 Uncharacterized membrane-associated protein 0.92 EX28DRAFT_1844 pseudouridine synthase, RluA family low > 76
Enterobacter sp. TBS_079 0.83 MPMX20_00759 Inner membrane protein YabI 0.89 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C low > 85
Klebsiella michiganensis M5al 0.78 BWI76_RS04600 inner membrane protein 0.93 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase low > 92
Pectobacterium carotovorum WPP14 0.66 HER17_RS03005 DedA family protein 0.81 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.39 61
Pantoea sp. MT58 0.66 IAI47_16045 DedA family protein 0.85 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 76
Serratia liquefaciens MT49 0.65 IAI46_03285 DedA family protein 0.80 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Dickeya dadantii 3937 0.62 DDA3937_RS18180 DedA family protein 0.80 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Dickeya dianthicola 67-19 0.62 HGI48_RS18130 DedA family protein 0.80 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 71
Dickeya dianthicola ME23 0.62 DZA65_RS19280 DedA family protein 0.80 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Erwinia tracheiphila SCR3 0.61 LU632_RS02820 DedA family protein 0.85 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Rahnella sp. WP5 0.57 EX31_RS03735 DedA family protein 0.82 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 89

Not shown: 0 genomes with orthologs for ECD_00067 only; 57 genomes with orthologs for ECD_01082 only