Conservation of cofitness between DDA3937_RS11320 and DDA3937_RS17020 in Dickeya dadantii 3937

24 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dadantii 3937 1.0 DDA3937_RS11320 YniB family protein 1.0 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.58 9
Dickeya dianthicola 67-19 0.97 HGI48_RS11360 YniB family protein 0.95 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 71
Dickeya dianthicola ME23 0.97 DZA65_RS11705 yfeABCD regulator yfeE 0.95 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 75
Pectobacterium carotovorum WPP14 0.74 HER17_RS11390 YniB family protein 0.75 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 75
Rahnella sp. WP5 0.71 EX31_RS14095 yfeABCD regulator yfeE 0.68 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 89
Serratia liquefaciens MT49 0.68 IAI46_10860 YniB family protein 0.68 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF3513 Putative membrane protein 0.62 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) low > 78
Pantoea sp. MT58 0.64 IAI47_11005 YniB family protein 0.62 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 76
Erwinia tracheiphila SCR3 0.63 LU632_RS10870 YniB family protein 0.57 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 74
Klebsiella michiganensis M5al 0.63 BWI76_RS11785 hypothetical protein 0.63 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase — —
Enterobacter asburiae PDN3 0.63 EX28DRAFT_1731 YniB-like protein 0.65 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA low > 76
Enterobacter sp. TBS_079 0.63 MPMX20_01888 hypothetical protein 0.64 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 85
Escherichia coli BW25113 0.61 b1726 yniB predicted inner membrane protein (NCBI) 0.65 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) low > 76
Escherichia coli ECRC101 0.61 MCAODC_18390 yniB Uncharacterized protein YniB 0.65 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 87
Escherichia coli ECOR38 0.61 HEPCGN_05385 yniB Uncharacterized protein YniB 0.66 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 87
Escherichia coli ECRC102 0.61 NIAGMN_01045 yniB Uncharacterized protein YniB 0.65 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Escherichia coli ECOR27 0.61 NOLOHH_17540 yniB Uncharacterized protein YniB 0.65 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 75
Escherichia coli BL21 0.61 ECD_01695 putative inner membrane protein 0.65 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent low > 61
Escherichia coli ECRC100 0.61 OKFHMN_27020 yniB Uncharacterized protein YniB 0.65 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_02007 hypothetical protein 0.65 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 73
Escherichia coli ECRC98 0.61 JDDGAC_01595 yniB Uncharacterized protein YniB 0.65 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 86
Escherichia coli ECRC62 0.61 BNILDI_16325 yniB Uncharacterized protein YniB 0.65 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 75
Escherichia coli ECRC99 0.61 KEDOAH_01090 yniB Uncharacterized protein YniB 0.65 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD — —
Escherichia fergusonii Becca 0.60 EFB2_02266 hypothetical protein 0.65 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 86
Escherichia coli Nissle 1917 0.60 ECOLIN_RS09635 YniB family protein 0.65 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD low > 55

Not shown: 0 genomes with orthologs for DDA3937_RS11320 only; 73 genomes with orthologs for DDA3937_RS17020 only