| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_06405 | | murein L,D-transpeptidase | 1.0 | CSW01_01445 | | lysine decarboxylase | 0.49 | 8 |
| Pantoea agglomerans CFBP13505 P0401 | 0.26 | PagCFBP13505_RS04550 | | L,D-transpeptidase | 0.70 | PagCFBP13505_RS13560 | | lysine decarboxylase LdcC | low | > 74 |
| Enterobacter asburiae PDN3 | 0.26 | EX28DRAFT_2011 | | Uncharacterized protein conserved in bacteria | 0.71 | EX28DRAFT_3774 | | Arginine/lysine/ornithine decarboxylases | low | > 76 |
| Enterobacter sp. TBS_079 | 0.26 | MPMX20_01583 | | putative L,D-transpeptidase YcbB | 0.71 | MPMX20_00870 | | Constitutive lysine decarboxylase | low | > 85 |
| Klebsiella pneumoniae MKP103 | 0.25 | KDGMDA_18050 | | L D-transpeptidase | 0.78 | KDGMDA_15475 | | lysine decarboxylase CadA | low | > 95 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.25 | GFF3682 | | L,D-transpeptidase YcbB | 0.77 | GFF2452 | | Lysine decarboxylase, inducible (EC 4.1.1.18) | low | > 78 |
| Pantoea sp. MT58 | 0.25 | IAI47_12780 | | L,D-transpeptidase | 0.70 | IAI47_15445 | | lysine decarboxylase LdcC | low | > 76 |
| Klebsiella michiganensis M5al | 0.25 | BWI76_RS09850 | | L,D-transpeptidase | 0.78 | BWI76_RS07195 | | lysine decarboxylase CadA | low | > 92 |
| Escherichia coli ECOR27 | 0.25 | NOLOHH_21960 | ldtD | L,D-transpeptidase | 0.78 | NOLOHH_04740 | cadA | lysine decarboxylase CadA | low | > 76 |
| Escherichia coli BW25113 | 0.24 | b0925 | ycbB | predicted carboxypeptidase (NCBI) | 0.78 | b4131 | cadA | lysine decarboxylase 1 (NCBI) | low | > 76 |
| Escherichia fergusonii Becca | 0.24 | EFB2_03139 | | putative L,D-transpeptidase YcbB | 0.78 | EFB2_04451 | | Inducible lysine decarboxylase | low | > 86 |
| Escherichia coli ECRC62 | 0.24 | BNILDI_20215 | ldtD | L,D-transpeptidase | 0.78 | BNILDI_06750 | cadA | lysine decarboxylase CadA | low | > 75 |
| Escherichia coli BL21 | 0.24 | ECD_00929 | | murein L,D-transpeptidase | 0.78 | ECD_04002 | | lysine decarboxylase, acid-inducible | low | > 61 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.24 | OHPLBJKB_02742 | | hypothetical protein | 0.78 | OHPLBJKB_03912 | | Inducible lysine decarboxylase | low | > 74 |
| Escherichia coli Nissle 1917 | 0.24 | ECOLIN_RS04895 | | L,D-transpeptidase | 0.78 | ECOLIN_RS23905 | | lysine decarboxylase CadA | low | > 55 |
| Escherichia coli ECRC98 | 0.24 | JDDGAC_09010 | ldtD | L,D-transpeptidase | 0.78 | JDDGAC_16110 | cadA | lysine decarboxylase CadA | low | > 87 |
| Escherichia coli ECRC99 | 0.24 | KEDOAH_22335 | ldtD | L,D-transpeptidase | 0.78 | KEDOAH_15690 | cadA | lysine decarboxylase CadA | — | — |
| Escherichia coli ECRC102 | 0.24 | NIAGMN_03120 | ldtD | L,D-transpeptidase | 0.78 | NIAGMN_10320 | cadA | lysine decarboxylase CadA | low | > 80 |
| Escherichia coli ECOR38 | 0.24 | HEPCGN_23125 | ldtD | L,D-transpeptidase | 0.78 | HEPCGN_11110 | cadA | lysine decarboxylase CadA | low | > 88 |
| Escherichia coli ECRC101 | 0.24 | MCAODC_24790 | ldtD | L,D-transpeptidase | 0.78 | MCAODC_02985 | cadA | lysine decarboxylase CadA | low | > 87 |
| Escherichia coli ECRC100 | 0.24 | OKFHMN_05400 | ldtD | L,D-transpeptidase | 0.78 | OKFHMN_12475 | cadA | lysine decarboxylase CadA | low | > 79 |
| Pseudomonas lactucae CFBP13502 | 0.16 | GEMAOFIL_03475 | | putative L,D-transpeptidase YcbB | 0.38 | GEMAOFIL_02693 | | Biodegradative arginine decarboxylase | low | > 96 |
Not shown: 11 genomes with orthologs for CSW01_06405 only; 40 genomes with orthologs for CSW01_01445 only